BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1923.p
         (689 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980699|ref|YP_001353138.1| flagellar hook-associated prote...    63   5e-11

>gi|152980699|ref|YP_001353138.1| flagellar hook-associated protein
           2 [Janthinobacterium sp. Marseille]
          Length = 672

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 48/81 (59%)

Query: 606 GIVTRLQTLMTNILSDSGIIATKTNGLQASLKINQDRQTAVQTRLSNLKDNYTNQFNQLN 665
           G   RL  L  + +   G+IA  TN L + +K   D   A + RL+ ++  Y  QF+ L+
Sbjct: 586 GYADRLNKLTDSFIGSEGLIAGNTNSLNSDIKRVTDDADAFKIRLTAIEARYRKQFSALD 645

Query: 666 TTLASMQSTQSYLTQQLAGLA 686
             +ASMQ+TQ+YLTQQLA +A
Sbjct: 646 ALVASMQTTQNYLTQQLAAIA 666


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.305    0.119    0.307 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,391,965
Number of extensions: 57750
Number of successful extensions: 267
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 3
Length of query: 689
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 599
Effective length of database: 888,291
Effective search space: 532086309
Effective search space used: 532086309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 133 (55.8 bits)