BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1922.p
         (152 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980696|ref|YP_001353137.1| FliS flagellar protein [Janthin...   167   2e-43

>gi|152980696|ref|YP_001353137.1| FliS flagellar protein
           [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  167 bits (424), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 108/149 (72%)

Query: 1   MFGSMKRGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESI 60
           MFGS + GANAYA +G+ETGVIAA+PHKLI MLF+G  +A+    + M  GNI +KG++I
Sbjct: 1   MFGSPQSGANAYAKVGMETGVIAANPHKLIIMLFEGVQIALNNALQQMQAGNIPEKGKAI 60

Query: 61  TKAILIIDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLEDI 120
           +K ILII+NGLRASL+K VGGE+A+NLD+LYEYM  RL  AN  N+  I+ E+  LL DI
Sbjct: 61  SKGILIIENGLRASLDKSVGGEIAINLDALYEYMVGRLLLANLNNDAEIIHEVQTLLNDI 120

Query: 121 RSAWEQIGPNAAQASPQMSMMQDLSQPSY 149
           +SAWE+I P  A+ +P   +   +   SY
Sbjct: 121 KSAWEEIAPKTAEPAPVTGLPGQIQASSY 149


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 345,044
Number of extensions: 13242
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 77
Effective length of database: 943,746
Effective search space: 72668442
Effective search space used: 72668442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)