BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1921.p
         (109 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980323|ref|YP_001353136.1| FliT flagellar protein [Janthin...   118   6e-29

>gi|152980323|ref|YP_001353136.1| FliT flagellar protein
           [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  118 bits (296), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 77/108 (71%)

Query: 1   MNGDDVIALYESISQLTDEMLSAARAGDWDRLATLEAQCGKHIASLRDSEENVSLSEPLR 60
           MN  ++I LYE+++ +TD+ML+AAR GDW+ L  LE +C   ++ L+  E  V+L+   R
Sbjct: 2   MNEQEIICLYENVATITDQMLAAARVGDWEELTALEQRCAAQVSMLKSGETPVALTGAER 61

Query: 61  HRKVDIIRKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYGMG 108
            RKV+II+KIL DDR+IRN+TEP + KLS LI S  TE+KL + YG G
Sbjct: 62  ERKVEIIKKILADDREIRNITEPWMAKLSMLINSTGTERKLNHAYGAG 109


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 218,234
Number of extensions: 6736
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 1,221,021
Length adjustment: 71
Effective length of query: 38
Effective length of database: 958,534
Effective search space: 36424292
Effective search space used: 36424292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)