BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1920.p
         (396 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982149|ref|YP_001353135.1| hypothetical protein mma_1445 [...   131   9e-32

>gi|152982149|ref|YP_001353135.1| hypothetical protein mma_1445
           [Janthinobacterium sp. Marseille]
          Length = 379

 Score =  131 bits (329), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 123/251 (49%), Gaps = 67/251 (26%)

Query: 1   MLPRADIASAVQPVNPVEAATAVVSVADARQEAFSRLAQIALGQQMSGRILSNFNDGTFL 60
           MLPRADI +  +PV  +EA T   ++  A+QE+  RL Q+ LG++   ++LS   DG FL
Sbjct: 1   MLPRADI-TGTRPVILIEATTPATALGQAKQESLDRLIQLTLGKEYQAQVLSRLADGNFL 59

Query: 61  VRIANTAARMVLPNSAKVGDTLTLTLVSKDPRPTFSVNEGSIRSDEESASVALSSAGRAM 120
           V+I N  A M LP   K GDT+ LTL++  PRPTF + +      +  A+ +LS+AGR +
Sbjct: 60  VKINNAPASMALPPGTKAGDTIDLTLLAVQPRPTFLLGK-----PDPGATTSLSNAGRLI 114

Query: 121 QKDLKSLQFVTRDESGADQIAQNEDVAADAQAKGARQGQAGGPASTTTTLSNAGRLIDTL 180
              L              Q+AQ                                      
Sbjct: 115 GNML--------------QLAQ-------------------------------------- 122

Query: 181 LQASQHGDVSDHVNATAPLL--PKANLPPEQVASALKDAIAYSGVFYESHVSAWAAGQRS 238
                 G +   +    PLL  P A+ P  Q+A AL++AIA+SG+FYESHV+ WA G R 
Sbjct: 123 -----EGGMPTTLVGKTPLLSAPGASAP--QIAGALQNAIAFSGLFYESHVAQWALGARP 175

Query: 239 AEDLMKEPQAQ 249
           A DL++EP A+
Sbjct: 176 ATDLLREPPAK 186



 Score =  123 bits (308), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 85/122 (69%), Gaps = 5/122 (4%)

Query: 273 QLINLQLNALEQQRVVWHGEVWPDQKMEWEINQEHDQDPSQNSQHNGEESAPTWHSVVRF 332
           +LI+LQL+ LEQ+RV+W GE++P Q +EWEI+   D+ P +N +    E  P W+S VRF
Sbjct: 263 KLISLQLDTLEQRRVMWQGELFPGQALEWEIS---DETPQKNKEQ--PEPEPVWNSTVRF 317

Query: 333 NFAHLGSVSASIRLIGQQIHVQVKADNEAATAALRGNSGLFANAMAAAGTSLDSLIVKQA 392
           +   LG+VSASIRL+G ++ +QV   +    +ALR +  L A+A+ AAG+ L+SL+VKQ 
Sbjct: 318 SLPTLGAVSASIRLVGDKVQIQVNTPSAETASALRTHGELLADALGAAGSPLESLLVKQQ 377

Query: 393 DG 394
           DG
Sbjct: 378 DG 379


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.311    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 748,692
Number of extensions: 25511
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 3
Length of query: 396
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 311
Effective length of database: 906,776
Effective search space: 282007336
Effective search space used: 282007336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)