BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1919.p
         (114 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444 [...   122   8e-30

>gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444
          [Janthinobacterium sp. Marseille]
          Length = 95

 Score =  122 bits (305), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 73/89 (82%), Gaps = 1/89 (1%)

Query: 1  MEKPNIPLQNAVALAYNASQAAPQVVAKGRGLVAEAIIARAREAGVYVHESKELVSLLMQ 60
          M+K   P Q AVALAY ++ +AP+VVAKGRG +AE II RA+E GV +HESKELV+LL+Q
Sbjct: 1  MDK-TTPPQQAVALAYQSNDSAPRVVAKGRGAIAEQIIERAKEHGVAIHESKELVALLLQ 59

Query: 61 VELDQQIPPALYRTVAELLAWLYRIENMQ 89
          VELD+ IPPALYR VAELLAWLYR+E  Q
Sbjct: 60 VELDEHIPPALYRAVAELLAWLYRVEAAQ 88


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 210,812
Number of extensions: 5462
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 1,221,021
Length adjustment: 71
Effective length of query: 43
Effective length of database: 958,534
Effective search space: 41216962
Effective search space used: 41216962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)