BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1918.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982033|ref|YP_001353133.1| hypothetical protein mma_1443 [...   254   4e-69

>gi|152982033|ref|YP_001353133.1| hypothetical protein mma_1443
           [Janthinobacterium sp. Marseille]
          Length = 252

 Score =  254 bits (648), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 116/250 (46%), Positives = 178/250 (71%), Gaps = 1/250 (0%)

Query: 1   MANHDEIDDDSPYRVHSRREIIALLTSMMEKNQLLSLLIKGGSESVITSILEVDTDDDSL 60
           + +  E DD +P+RV SRRE+IALL S+ E+NQL+ ++I  G+++++TSIL +D  +D++
Sbjct: 3   LVSDHENDDMNPFRVRSRREVIALLRSIGERNQLVRMVINHGADTIVTSILNIDETNDTV 62

Query: 61  IIDAAPSAMLNDSIVSSKHIHFEALYNSIRITFAADGARQVEYQNRPALKVEIPASLVRL 120
           ++D AP+A++N  ++ S  + FE +  +IRI F +  A    Y+N PA  + +P S+VRL
Sbjct: 63  LLDCAPTAIMNQRVLDSNKLSFETVLENIRILFNSPSAESCMYENLPAFVIPLPTSVVRL 122

Query: 121 QRREFFRIPTPIAKPLRCTFRITQPDGSFITVVTLLNNISAGGVGITDEKKLLATTPGIV 180
           QRREF+R+PTP+  P+ CT   T  +G  I V T L+NIS GGV + DEKKLL+TT G+ 
Sbjct: 123 QRREFYRVPTPLTAPVSCTVPYTT-EGVTIEVATTLHNISGGGVSLVDEKKLLSTTIGLT 181

Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKVVNRFGCQFVDIPRTVLAAIQRFITKLE 240
           Y++C++ L  + L++V LQVR+  E  +TNGK +NR GC+F++     LA +Q++ITK+E
Sbjct: 182 YQNCKIVLPGSGLITVALQVRNVLELTLTNGKSINRIGCEFINPSNGTLATVQKYITKIE 241

Query: 241 REQNAKASGM 250
           REQNAKA+G+
Sbjct: 242 REQNAKATGL 251


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 521,452
Number of extensions: 19212
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)