BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1917.p
         (118 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980352|ref|YP_001353132.1| flagellar hook-basal body prote...   129   4e-32

>gi|152980352|ref|YP_001353132.1| flagellar hook-basal body protein
           FliE [Janthinobacterium sp. Marseille]
          Length = 122

 Score =  129 bits (325), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 7   IDTSKIEAMVAQLKAAAARAQG-GVDPVQSAVQAEKPAQRVDFADVLKGAIDQVNDSQQK 65
           ID+S I+AMVAQL+AAAAR+Q   V+P+    Q EK A R DF+  LK ++D V  +Q  
Sbjct: 10  IDSSAIDAMVAQLRAAAARSQAPSVNPLGGMAQPEKTATRADFSQALKASLDNVASAQNS 69

Query: 66  AAKMSQAFAMGDDNVNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV 118
           A +M + F+MGDD+VNLSDVM++ QKASISFQ ++QVRNKLVSAY+++M MQV
Sbjct: 70  ANQMGEKFSMGDDSVNLSDVMVSMQKASISFQATVQVRNKLVSAYQEMMNMQV 122


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.122    0.307 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 174,643
Number of extensions: 4853
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 46
Effective length of database: 954,837
Effective search space: 43922502
Effective search space used: 43922502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)