BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1916.p
         (569 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980320|ref|YP_001353131.1| flagellar MS-ring protein [Jant...   639   0.0  

>gi|152980320|ref|YP_001353131.1| flagellar MS-ring protein
           [Janthinobacterium sp. Marseille]
          Length = 585

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/576 (59%), Positives = 422/576 (73%), Gaps = 30/576 (5%)

Query: 8   QGGVLGYARSPQGKRILLIIAAAATLALMAGIWLWSQKVEYRVLFSNFNDRDGGAIVAAL 67
           Q   +  A+SP G++++L++ +AA +A+M  + LWSQK EY+VLFSNF+DRDGGAI+++L
Sbjct: 26  QNSFMDMAKSPNGRKVMLMLGSAAVIAIMIALVLWSQKPEYKVLFSNFSDRDGGAIMSSL 85

Query: 68  QQMNVPYKYSESGMAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQV 127
           Q  NVPYK++E G AILVP + VH+ RLKLAA+GLPKGG VGFELMENQKLG+SQFLEQV
Sbjct: 86  QASNVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGGVGFELMENQKLGVSQFLEQV 145

Query: 128 NFQRALEGELARSVQSLSSVQTARVHLALPKASVFVRDQQKPTASVILSLYPGRYLDPQQ 187
           NFQRALEGELARS+QS+ +VQ ARVHLA+PKASVFVRDQQKPTASV+L+L  GR LD QQ
Sbjct: 146 NFQRALEGELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRALDQQQ 205

Query: 188 VSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQGQPNTLDPTQLKYVQDMQQDIVKR 247
           VSAIVHLVASSVPELSPK VTIVDQ+GNLLS+T K    NTLDP+QLKYVQ++QQ I KR
Sbjct: 206 VSAIVHLVASSVPELSPKNVTIVDQSGNLLSETNKPAGSNTLDPSQLKYVQELQQSITKR 265

Query: 248 VESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSATSGT 307
           +ESII PIVG  N+RAEATADVDFS SEQA+E YKPNQ  +SA VRS Q+SE+    +G 
Sbjct: 266 IESIITPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGNGTGA 325

Query: 308 SGVPGALTNQPPAPATAQIVN-PAAANGAAN----------QNGAATPNGAAPTPAASGN 356
           SGVPGALTNQP   ATA +   P AA+G  +             AA    AA   A +  
Sbjct: 326 SGVPGALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAANATP 385

Query: 357 SRKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTLDNTGKIVMRPLTEAERNQIT 416
           ++KD T N+EVDKTVRY QQPMGG++RL+VAVVVNYKR +   GK+ + PL+E E+NQIT
Sbjct: 386 TQKDTTTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEKNQIT 445

Query: 417 DLVKEAMGYNKDRGDSLNVVNTQFSTDMEPEV---PLWKQPGMIDLAKEIGKYILVAAVL 473
           DLVKEAMGYNKDRGD+LNVVN+ F+   + E+   PLW++P +I++A +  KY+ +  VL
Sbjct: 446 DLVKEAMGYNKDRGDTLNVVNSPFAGVEKDEIVQPPLWERPEIIEMAIQAAKYLAIGIVL 505

Query: 474 LFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGEPA 533
             LY ++L+P++ KL+     E LA E   AEA         G     P  I N      
Sbjct: 506 FLLYRKLLKPMLNKLN-PPPPEPLALEDESAEALEKMHLEEDG----KPMGIQN------ 554

Query: 534 VDERAQYKANLETAKQWAKNDPKLVASIIKSWVNNE 569
                 Y+ NLE AK+ A+ DPK+VA+I+KSWV N+
Sbjct: 555 -----TYQQNLEAAKELARKDPKVVANIVKSWVGND 585


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,125,559
Number of extensions: 39875
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 481
Effective length of database: 895,685
Effective search space: 430824485
Effective search space used: 430824485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)