BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1915.p
         (331 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980204|ref|YP_001353130.1| FliG flagellar motor switch pro...   530   e-152

>gi|152980204|ref|YP_001353130.1| FliG flagellar motor switch
           protein [Janthinobacterium sp. Marseille]
          Length = 331

 Score =  530 bits (1364), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/331 (78%), Positives = 291/331 (87%)

Query: 1   MSNDGVQKGAILMLALGEDEAAEVMKYLGPKEVQKLGAAMSALRNVSFEEINEVLEAFVA 60
           M ++GV KGAILMLALG DEAAEVMKYLGP+EVQKLGAAMS ++ +  EE+  VL  F A
Sbjct: 1   MIDNGVHKGAILMLALGADEAAEVMKYLGPREVQKLGAAMSTMKAIQSEELVAVLSEFRA 60

Query: 61  ETGQASSLGLDSDEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELI 120
           ET + +SLGLDSD+YIR VLTKALGDDKA SLLNRILG RDASGIESLKWMD QSVA+L+
Sbjct: 61  ETEKNTSLGLDSDDYIRDVLTKALGDDKAASLLNRILGARDASGIESLKWMDGQSVADLV 120

Query: 121 RNEHPQIIATILVHLERDHACGIINNFTERLRNDVILRIATLDGVQPAALRELNDVLTKL 180
           RNEHPQIIATILVHLERD AC ++  FTERLRNDV+LRIATLDGVQPAALRELN+VLTKL
Sbjct: 121 RNEHPQIIATILVHLERDQACEVLERFTERLRNDVVLRIATLDGVQPAALRELNEVLTKL 180

Query: 181 LTGNESLKKQQMGGIRTAAEILNFMSGENETSVMNNLRSYDEDMAQKIMDEMFVFENIID 240
           LTGNE+LKK+ MGG+R AAEILNF SGENE SVM NL+SYD DMAQKIMDEMFVF+NI+D
Sbjct: 181 LTGNENLKKKPMGGVRAAAEILNFFSGENEISVMANLKSYDNDMAQKIMDEMFVFDNIMD 240

Query: 241 IDGRGIQLLLREVQSESLIVALKGASQGLRDKIFANMSQRAAEMMKEDLESKGPVRLSEV 300
           I+ RGIQLLLREVQSESLIVALKGA+  LR+K F NMSQRA EMM+EDLESKGPVRLSEV
Sbjct: 241 IEDRGIQLLLREVQSESLIVALKGATPELREKFFKNMSQRAGEMMREDLESKGPVRLSEV 300

Query: 301 DAQQKAILQIVRRLADEGQIVLGAKGEDAFI 331
           +  QK ILQI+RRLADEGQ+ LG K EDA++
Sbjct: 301 ETNQKEILQIIRRLADEGQLTLGGKAEDAYV 331


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 665,580
Number of extensions: 25249
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 247
Effective length of database: 910,473
Effective search space: 224886831
Effective search space used: 224886831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)