BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1914.p
         (233 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980623|ref|YP_001353129.1| FliH flagellar biosynthesis/typ...   218   3e-58

>gi|152980623|ref|YP_001353129.1| FliH flagellar biosynthesis/type
           III secretory pathway protein [Janthinobacterium sp.
           Marseille]
          Length = 232

 Score =  218 bits (555), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 153/239 (64%), Gaps = 18/239 (7%)

Query: 3   AKIIPKEEMTPYQRWELASFNEEPEPEPEPEPIEEEFLEEPPPVPQLT---------AEQ 53
           + +IPKE  + YQRWE+ SFNEE +P  + EP+++   E                  AEQ
Sbjct: 2   SNVIPKERQSAYQRWEMTSFNEE-KPIVKVEPVKDAAAELAAANAAAAAHTANIAAMAEQ 60

Query: 54  LDAIREAARQEGFAEGREHGQQIGRSEGYMAGLQQGQQEINEVIQHFRQIAVNFSTEVSQ 113
           ++  R  A  EG+A G E G+  G +EG +    Q +QE     Q   QIA  F TEV+Q
Sbjct: 61  IENARAEAHAEGYAAGMEEGRAAGLAEGRV----QAEQEK----QTLLQIADTFGTEVAQ 112

Query: 114 CSEKMAPELLDLALDLAKSMLKTALNVRPELILPTVSAAIHALPVLQLPASLTLHPEDAA 173
            +E +A ++LDLALDLAK+MLKTALNVRPELI+P V  AIH LP LQ PA L LHP+DAA
Sbjct: 113 ANELIASDMLDLALDLAKAMLKTALNVRPELIVPLVREAIHYLPTLQQPALLHLHPDDAA 172

Query: 174 LVHKHLGEELGKQGWKINEDAQLERGGCRVETRTNQIDATTQTRWQRLGESLSKQLDWL 232
           ++  HLG+EL    W++ ED  ++RG CRVET TNQIDATT TRWQR+  +L K+ DWL
Sbjct: 173 IIASHLGDELSTAAWRVVEDPHMDRGSCRVETVTNQIDATTSTRWQRIAAALGKESDWL 231


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 439,626
Number of extensions: 14475
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 153
Effective length of database: 925,261
Effective search space: 141564933
Effective search space used: 141564933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)