BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1913.p (468 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP syn... 731 0.0 gi|152980404|ref|YP_001355317.1| F0F1 ATP synthase subunit beta ... 168 7e-43 gi|152980082|ref|YP_001355319.1| F-type H+-transporting ATPase a... 130 2e-31 gi|152980394|ref|YP_001352312.1| transcription termination facto... 79 5e-16 >gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP synthase [Janthinobacterium sp. Marseille] Length = 448 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/446 (82%), Positives = 401/446 (89%) Query: 22 LVAMAEPTRTAGRITRVAGLVMEAVGLKLPVGSPCNVPLPNGMMIEAEVVGFQDERLFLM 81 L+ +AEP +GRITRVAGLVMEAVGLKL VGS C VPL NG IEAEVVGF+++RLFLM Sbjct: 2 LLDIAEPMLVSGRITRVAGLVMEAVGLKLAVGSACTVPLANGARIEAEVVGFENDRLFLM 61 Query: 82 PQSDVEGIVPGTRVYPVEPVRPPPRTGPISFTPRRADEHSRRLPVGDELLGRVLDGAGRP 141 PQSDVEGIVPGTRVYPVE V+ PR G ++ RR + R LPVG ELLGRVLDGAGRP Sbjct: 62 PQSDVEGIVPGTRVYPVEVVQSLPRPGAVTHPRRRPSDRGRHLPVGIELLGRVLDGAGRP 121 Query: 142 LDNLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRAINSMLTVGRGQRMGLFAGSGVG 201 LDNLGPL+ +APL VRAANPL RAPI D+LD G+RAINSMLTVGRGQRMGLFAGSGVG Sbjct: 122 LDNLGPLNAAHAAPLNVRAANPLSRAPITDVLDVGVRAINSMLTVGRGQRMGLFAGSGVG 181 Query: 202 KSVLLGMMARYTSADVIVVGLIGERGREVKEFIEQILGAEGLARSVVVAAPADTPPLMRL 261 KSVLLGMMARYT+ADVIVVGLIGERGREVKEFIEQILGAEGLARSVVVAAPADTPPLMRL Sbjct: 182 KSVLLGMMARYTTADVIVVGLIGERGREVKEFIEQILGAEGLARSVVVAAPADTPPLMRL 241 Query: 262 QGAAYCTSIAEYFRDQGKDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA 321 QGAAY T+IAE+FRD+GKDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA Sbjct: 242 QGAAYATAIAEHFRDEGKDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA 301 Query: 322 LVERAGNGDEGGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLNRQLAEAGHYPAID 381 LVERAGNG EGGGSITAFYTVLTEGDDQQDPIAD+ARAILDGHIVLNR LAEAGHYPAID Sbjct: 302 LVERAGNGKEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLNRSLAEAGHYPAID 361 Query: 382 IEQSISRAMHSITDADHQRRSRHLKQLYSRFQRNRDLISVGAYAAGSDPILDEAIALLPR 441 IEQSISRAMH+IT +HQ+++R LKQL SR+QRNRDLISVGAY+AGSDP+LDEAIAL + Sbjct: 362 IEQSISRAMHNITTPEHQKQTRKLKQLTSRYQRNRDLISVGAYSAGSDPVLDEAIALNSK 421 Query: 442 MEAFLQQGIHEQSDVSESLGQLTALF 467 +E+FLQQ I E+ +SESLGQL +LF Sbjct: 422 IESFLQQDITERCGISESLGQLASLF 447 >gi|152980404|ref|YP_001355317.1| F0F1 ATP synthase subunit beta [Janthinobacterium sp. Marseille] Length = 466 Score = 168 bits (425), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 183/343 (53%), Gaps = 22/343 (6%) Query: 124 LPVGDELLGRVLDGAGRPLDNLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRAINSM 183 +PVG LGR++D G P+D GP+ ER+A + +A +P +D+L+TGI+ I+ + Sbjct: 76 VPVGTATLGRIMDVLGNPIDECGPVSHERTASIHRKAPAYDELSPSQDLLETGIKVIDLV 135 Query: 184 LTVGRGQRMGLFAGSGVGKSV----LLGMMARYTSADVIVVGLIGERGREVKEFIEQILG 239 +G ++GLF G+GVGK+V L+ +A+ S + G +GER RE +F ++ Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAG-VGERTREGNDFYHEMAD 194 Query: 240 AEGL-------ARSVVVAAPADTPPLMRLQGAAYCTSIAEYFRDQGKDVLLIMDSLTRYA 292 A+ + ++ +V + PP RL+ A ++AE FRD+GKDVL +D++ R+ Sbjct: 195 AKVVDLENPANSKVAMVYGQMNEPPGNRLRVALTGLTMAEAFRDEGKDVLFFVDNIYRFT 254 Query: 293 MAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGDEGGGSITAFYTVLTEGDDQQDP 352 +A E++ +G P+ GY P++ ++ L ER + GSIT+ V DD DP Sbjct: 255 LAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKT--GSITSIQAVYVPADDLTDP 312 Query: 353 IADAARAILDGHIVLNRQLAEAGHYPAIDIEQSISRAMHS-ITDADHQRRSRHLKQLYSR 411 A LD +VL+R +A G YPA+D S SR + + DH +R ++ R Sbjct: 313 SPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGQDHYDTARAVQGTLQR 372 Query: 412 FQRNRDLISVGAYAAGSDPILDEAIALLPR---MEAFLQQGIH 451 ++ RD+I++ G D + E L+ R M+ FL Q H Sbjct: 373 YKELRDIIAI----LGMDELAPEDKLLVARARKMQRFLSQPFH 411 >gi|152980082|ref|YP_001355319.1| F-type H+-transporting ATPase alpha chain [Janthinobacterium sp. Marseille] Length = 511 Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 144/280 (51%), Gaps = 15/280 (5%) Query: 124 LPVGDELLGRVLDGAGRPLDNLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRAINSM 183 +P+G EL GRV++ G+P+D GP++T+ + P+ A + R + + TGI+AI++M Sbjct: 97 VPIGPELCGRVVNALGQPIDGKGPINTKLTTPIEKIAPGVIARQSVDQPMQTGIKAIDAM 156 Query: 184 LTVGRGQRMGLFAGSGVGKSVLL--GMMARYTSADVIVVGLIGERGREVKEFIEQILGAE 241 + +GRGQR + GK+ + ++ + + IG++ +K + + Sbjct: 157 VPIGRGQRELIIGDRQTGKTAVAIDAIINQKGQGVTCIYVAIGQKASSIKNIVRALEQHG 216 Query: 242 GLARSVVVAAPADTPPLMRLQGAAYCTSIAEYFRDQGKDVLLIMDSLTRYAMAQREIALA 301 + ++VVAA A M+ A ++ EYFRD+G+D L++ D L++ A+A R+++L Sbjct: 217 AMEYTIVVAATASESAAMQFVSAYSGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQVSLL 276 Query: 302 IGEPPATKGYPPSVFAKLPALVERAG--NGD------EGG-----GSITAFYTVLTEGDD 348 + PP + +P VF L+ERA N D +G GS+TA + T+ D Sbjct: 277 LRRPPGREAFPGDVFYLHSRLLERAARVNADYVEAFTKGAVKGKTGSLTALPIIETQAGD 336 Query: 349 QQDPIADAARAILDGHIVLNRQLAEAGHYPAIDIEQSISR 388 + +I DG I L L +G PAI+ S+SR Sbjct: 337 VSAFVPTNVISITDGQIFLETSLFNSGVRPAINAGISVSR 376 >gi|152980394|ref|YP_001352312.1| transcription termination factor Rho [Janthinobacterium sp. Marseille] Length = 421 Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 126/272 (46%), Gaps = 23/272 (8%) Query: 142 LDNLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRAINSMLTVGRGQRMGLFAGSGVG 201 +NL PLH + PL + + G I TG R I+ + +G+GQR L A G Sbjct: 133 FENLTPLHPNK--PLLLER-DMRGEENI-----TG-RIIDLIAPIGKGQRGLLVASPKSG 183 Query: 202 KSVLLGMMARYTSAD----VIVVGLIGERGREVKEFIEQILGAEGLARSVVVAAPADTPP 257 KSV+L +A + + V++V LI ER EV E + G VVA+ D P Sbjct: 184 KSVMLQHIAHAITTNHPEAVMIVLLIDERPEEVTEMQRSVRGE-------VVASTFDEPA 236 Query: 258 LMRLQGAAYCTSIAEYFRDQGKDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFA 317 +Q A A+ + KDV++++DS+TR A A + A G+ T G + Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGK-VLTGGVDANALQ 295 Query: 318 KLPALVERAGNGDEGGGSITAFYTVLTE-GDDQQDPIADAARAILDGHIVLNRQLAEAGH 376 + P A E GGS+T T L E G D I + + + + L R+LAE Sbjct: 296 R-PKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRV 354 Query: 377 YPAIDIEQSISRAMHSITDADHQRRSRHLKQL 408 YPAI++ +S +R + D ++ L++L Sbjct: 355 YPAINLNKSGTRREELLIKPDQLQKIWVLRKL 386 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,103,864 Number of extensions: 49001 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 4 Length of query: 468 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 381 Effective length of database: 899,382 Effective search space: 342664542 Effective search space used: 342664542 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)