BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1912.p
         (149 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979835|ref|YP_001353127.1| flagellar biosynthesis chaperon...   181   1e-47

>gi|152979835|ref|YP_001353127.1| flagellar biosynthesis chaperone
           [Janthinobacterium sp. Marseille]
          Length = 146

 Score =  181 bits (460), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 111/145 (76%)

Query: 3   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 62
           MAT +ALDTLIELATKETDEA KRLG+ ++ +EE +QKL +L+QYRDDYAARFQ+ L+ G
Sbjct: 1   MATSTALDTLIELATKETDEAAKRLGKCMKTAEECEQKLALLEQYRDDYAARFQQNLSTG 60

Query: 63  LTALAYRNFQLFLEKIDTAIDGQVNVVQSSQQRVAEARAAWQACERKRMSYDTLATRARD 122
           L+AL Y+N+Q FL K++ AI  Q +VV+ +  RV   R+AWQA ERKRMSY TLA RA  
Sbjct: 61  LSALGYQNYQQFLGKLEQAISSQQSVVRDAHMRVERERSAWQASERKRMSYGTLANRALK 120

Query: 123 QEMRKENKRDQKSMDEHASRISFYK 147
            +  +ENKRDQK  DEHA+R   YK
Sbjct: 121 AKQLQENKRDQKQTDEHAARALLYK 145


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 257,889
Number of extensions: 7311
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 74
Effective length of database: 943,746
Effective search space: 69837204
Effective search space used: 69837204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)