BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1911.p
         (428 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979869|ref|YP_001353126.1| flagellar hook-length control p...   155   4e-39

>gi|152979869|ref|YP_001353126.1| flagellar hook-length control
           protein [Janthinobacterium sp. Marseille]
          Length = 391

 Score =  155 bits (393), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 162/335 (48%), Gaps = 43/335 (12%)

Query: 100 KDKDSDDDASTQASAELLALVANIAQNAVKPVTEGKSQNTDADLLAQAKRGGAKLSLADE 159
           K ++SD +A T  SAELLA VA + Q     V       +    L      G  + +  E
Sbjct: 94  KTEESDTEAVT-VSAELLAFVAALTQANTAAVATTAPAASADAEL------GVTVKVEGE 146

Query: 160 HQAMLDKKDGKVDLAALQNAMNAAKGKQDAELAG-----KGNVAEANAPVHAG-KDAIDL 213
               +D K G   + A  ++   A GK+   +A      KG     N PV A  K  IDL
Sbjct: 147 LDPAVDTKLGANLITAAADSEKEAVGKKSDFVAALDKATKGGTEAKNTPVAAPVKTEIDL 206

Query: 214 GAAKATPKDDATTLAARAQLHKTTPELAVNPAKQELPQAAPTPVVLPAMQQTLAANQPQA 273
                     AT +A  ++        A+ PA    PQ         A+QQ   A  PQ 
Sbjct: 207 ----------ATAIAQGSK--------ALEPATVTTPQTVAAVTAA-ALQQLSDAQGPQ- 246

Query: 274 VFAPAYSDKIQANVGSAGWNQALGSKITWMASAGMQSASLSLNPPDLGPMQVVLNVHNQQ 333
                 S+KI   VG+ GW+QALG K+ WM     QSA+L+LNPPDLGPMQV L+V N Q
Sbjct: 247 ------SNKIAPQVGNPGWDQALGQKVLWMVQGAQQSATLTLNPPDLGPMQVTLHVSNNQ 300

Query: 334 ADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQANVQTGMPNQQQGAGNGQPQARNS 393
           A A F   QPEV+ ALEAAMP+LREM++ AGIQLGQ+NV  G PNQQ   G    + R S
Sbjct: 301 ATANFTAHQPEVRHALEAAMPRLREMLNDAGIQLGQSNVSAGTPNQQGSFG----EQRQS 356

Query: 394 SSGNFGKDQDGDAAITGTTSASASTSGLGLVDTFA 428
            S       D   A    +      SG GLVDTFA
Sbjct: 357 GSARQSNQVDIADAAVHVSHVPVPASGNGLVDTFA 391


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.305    0.118    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 715,420
Number of extensions: 25193
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 342
Effective length of database: 903,079
Effective search space: 308853018
Effective search space used: 308853018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 131 (55.1 bits)