BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1908.p
         (151 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/typ...   217   3e-58

>gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type
           III secretory pathway protein [Janthinobacterium sp.
           Marseille]
          Length = 139

 Score =  217 bits (552), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/151 (78%), Positives = 121/151 (80%), Gaps = 12/151 (7%)

Query: 1   MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSAADI 60
           MADEN       EDD WGAAMAEQ Q E A           I A PA ATVFKD +  D+
Sbjct: 1   MADENEPQT-TVEDD-WGAAMAEQEQTEAA----------AIDAKPASATVFKDFAGGDL 48

Query: 61  KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120
           KT T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLI
Sbjct: 49  KTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLI 108

Query: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151
           AQGEVVVVNDKFGIRLTDIITPAERIRKLNR
Sbjct: 109 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 139


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 304,490
Number of extensions: 10915
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 76
Effective length of database: 943,746
Effective search space: 71724696
Effective search space used: 71724696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)