BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1907.p
         (178 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980400|ref|YP_001353122.1| FliO flagellar protein [Janthin...   115   2e-27

>gi|152980400|ref|YP_001353122.1| FliO flagellar protein
           [Janthinobacterium sp. Marseille]
          Length = 149

 Score =  115 bits (287), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 20  LLLGSNLLSCAQAWAENAPASAAATPAASTLPSSSGSVFTMLFGLVVVLAVMAGVAWLFK 79
           +LL S LL+ A + +     +AA     S +PS++G++F +L GLVVVLA+MAG AWL +
Sbjct: 7   VLLRSALLTVAFSASTAYAETAATVTTGSAVPSTAGNLFQVLLGLVVVLALMAGAAWLLR 66

Query: 80  RFGLTQNFNGNAAAKVVGGVSVGTRERVMVIEVGEQWIVVGVAPGRVNALATLPRQELAA 139
           RF   +  + NA  K+VGGVSVG+RERV+V+E+ +QWIVVGVAPGRVN+LAT+ +QE   
Sbjct: 67  RFNTAKGIS-NANIKIVGGVSVGSRERVVVVEIADQWIVVGVAPGRVNSLATMQKQETTL 125

Query: 140 GQSGQGSGPSFANWLKHTMDKRNG 163
                 SG +F++WL  T++KRNG
Sbjct: 126 TPEAPSSG-NFSSWLAQTIEKRNG 148


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 147,866
Number of extensions: 3282
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 101
Effective length of database: 936,352
Effective search space: 94571552
Effective search space used: 94571552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)