BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1906.p
         (244 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein ...   354   3e-99

>gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein
           FliP [Janthinobacterium sp. Marseille]
          Length = 252

 Score =  354 bits (908), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/231 (81%), Positives = 208/231 (90%), Gaps = 1/231 (0%)

Query: 15  LAASAQQ-GLPALNSMPAPGGGTNYSLPIQTMLFLTSLSFIPAALLMMTCFTRIVIVLSL 73
           +AA AQQ GLPA  S PAPGGG  YSL +QT+L LT LSF+PA LLMMT FTRI+IVLSL
Sbjct: 22  VAAMAQQAGLPAFTSSPAPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 81

Query: 74  LRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTEAYQPFAENKIQMMEALDKGAAP 133
           LRQALGTQS+PP QV++GLSLFLT FVMSPV D+IY +AYQPF++NKIQM EALDK  AP
Sbjct: 82  LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSQNKIQMQEALDKAVAP 141

Query: 134 LKEFMLKQTRQSDLALYVKLSHGPALQGPEDVPLRLLVPAFVTSELKTSFQIGFAIFIPF 193
           LK FM+KQTR+SDLALYVKLS GP LQGPED+PLR+LVPAFVTSELKT+FQI FAIFIPF
Sbjct: 142 LKTFMIKQTRESDLALYVKLSKGPELQGPEDIPLRILVPAFVTSELKTAFQISFAIFIPF 201

Query: 194 LIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAQSFY 244
           LIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQLLIGSLAQSFY
Sbjct: 202 LIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSFY 252


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 477,923
Number of extensions: 17220
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 163
Effective length of database: 921,564
Effective search space: 150214932
Effective search space used: 150214932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)