BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1904.p
         (267 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980679|ref|YP_001353119.1| FliR component of the flagellar...   283   1e-77

>gi|152980679|ref|YP_001353119.1| FliR component of the flagellar
           biosynthesis pathway [Janthinobacterium sp. Marseille]
          Length = 263

 Score =  283 bits (723), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/263 (53%), Positives = 197/263 (74%), Gaps = 1/263 (0%)

Query: 1   MLTFSSQQLYAWVAMFIWPTTRILGLLSIAPPFGSASVPMLVKVLLGIAIGAVLAPDVPV 60
           M++ +S +L  W+A F+WP TRI+G++S+AP FG+ SVP  VK+ LGI +  ++AP VP 
Sbjct: 1   MISLTSAELNTWIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPA 60

Query: 61  PPAIDPMSMTGLLILLQQLLIGLSMGFAMRVVFAAVEAAGELTSSTMGLSFAAFFDPQTQ 120
            PA+DPMS+ GLLIL QQL+IGLS+GFAMR+ FA VE AGE+   TMGL FA+FFDPQT+
Sbjct: 61  MPALDPMSLQGLLILAQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTR 120

Query: 121 GRTAAISQVFSLLATMVFLSLNGHLMLLQVMAESFHTLPITGVPVTTEGFHQLGLWGAKI 180
            R++AISQ  +LL  M++L+ N HL++L  +A+SF  LPI+   ++  G  ++  WG +I
Sbjct: 121 ARSSAISQFLALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRI 180

Query: 181 FSMGVQLSLPLLIALLITNFALGILTRAAPQLNLFGIGFSITMLAGFVLIAFTLPYMLTP 240
           FS GVQLSLP++ ALLITN ALGILTRAAPQLN+FGIGF IT+  GF++I   LPY++ P
Sbjct: 181 FSAGVQLSLPIVAALLITNIALGILTRAAPQLNIFGIGFPITIGVGFIMIGIVLPYLMNP 240

Query: 241 LQRFLADGIE-MVRLLGSVPPVN 262
           +   + +GI+ M R+  ++ P+N
Sbjct: 241 IINLMQEGIDAMGRITVAMTPLN 263


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 500,720
Number of extensions: 16478
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 185
Effective length of database: 917,867
Effective search space: 169805395
Effective search space used: 169805395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)