BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1902.p
         (777 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980141|ref|YP_001353117.1| flagellar hook-associated prote...   415   e-117

>gi|152980141|ref|YP_001353117.1| flagellar hook-associated protein
           FlgK [Janthinobacterium sp. Marseille]
          Length = 647

 Score =  415 bits (1067), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/562 (45%), Positives = 345/562 (61%), Gaps = 33/562 (5%)

Query: 3   TNIFSIGQSALQAAMAAQATTSHNISNATTPGYNRQEVVQSSAGGINY-GYGFVGQGTQV 61
           +N+ SI +S L AA A  ATT HNI+N  TPGY+RQ V+QSS GG N  G G++G GT V
Sbjct: 2   SNLLSIAKSGLAAAQAGVATTGHNIANEKTPGYSRQLVIQSSLGGQNLTGGGYIGNGTNV 61

Query: 62  TEIKRVYNDFLTKQALASQTSASSLDSYYAQISQINNMVADTKAGLSPALQDFFASVQNL 121
             +KR++NDFL  Q +A+Q+S S LD+YYAQ++++NNM+AD+  GL+P +Q FF  +Q+L
Sbjct: 62  DSVKRIFNDFLAAQVVAAQSSTSQLDTYYAQMNKVNNMLADSSVGLAPVIQSFFKGIQDL 121

Query: 122 ASNPNTQASRQTVLSQASTLVARISAINDQLSQSSASVNSQITSTVTTINSYAQQIAQLN 181
            +NP   +SRQ +LS A  LV+R  +++ QLS   A VN++IT  VT IN+YA+QIAQLN
Sbjct: 122 VNNPGGASSRQAMLSGAEALVSRFQSMDGQLSSMRAGVNNEITGAVTNINAYAKQIAQLN 181

Query: 182 QAIVNAVGTGGGQQPNDLLDQRDQLVSELNKYVKITTVPQDTGAVSVFIGTGQSLVAGDQ 241
            AI  A   G GQ PNDLLDQRD LV+EL K  K++ V Q  G  +VFIG GQ LV G+ 
Sbjct: 182 DAIAKAQ-NGSGQPPNDLLDQRDLLVAELAKQTKVSIV-QQAGDYNVFIGNGQPLVVGNS 239

Query: 242 VTQLAVTNSPTDVSRLQVGQVLPGGGTATIPDSFFYDGGSLGGLLRYRTETLDPTQNALG 301
              L    SPTD  RL+VG V   G T TIP+S    GG+LGGL  YR+++LDP QNALG
Sbjct: 240 NYDLVTVTSPTDPGRLEVGYV-SNGTTYTIPESSL-TGGNLGGLFEYRSQSLDPIQNALG 297

Query: 302 RITIAMGTAFNQQQQLGLDQNGNPGTNMFNISSPNLIGYPTNTGTTDLKAVITDPSSLST 361
           RI + +   FN Q +LG DQNGN G + F+++SP + G   NTG   + A I++  +L+T
Sbjct: 298 RIALGLAATFNAQHKLGQDQNGNLGGDFFSLASPAVTGSTKNTGNAQIGASISNVDALTT 357

Query: 362 SDYTLTYDGTNYTFTRLSDNTKTVKAAADFPV-TLDGVTYSNGAAAPGPFAPSIPSGNIY 420
           SDY L+YDGTNY  TRLSDN  ++ + A FP  T+DGV +S         + ++ SG+ +
Sbjct: 358 SDYRLSYDGTNYKVTRLSDNA-SMYSGATFPAGTIDGVDFS-------VTSGTMASGDEF 409

Query: 421 KIQPTANGAAAFSLALNNTQLLASAAPISTSANATNNVNASMPATNTGNAIISNTALDST 480
            I+PT NGA+  ++ + + + +A+A PI T A          P TNTG   IS  A + T
Sbjct: 410 LIRPTVNGASGLNVLIKDVKEIAAATPIRTGA----------PTTNTGTGAIS--AGNIT 457

Query: 481 KFQQGSSVSFTASVSGSQVQLSAAWTG-AAPVPTVTYTNPDGSTGTATGGAAFNYTPGMT 539
               GS+V  T  V+ +    +   TG  A +P    TN  G   T   G    YT G  
Sbjct: 458 SAFDGSAV--TTPVTLTYDSAANTLTGFPAGMPVTVTTN--GVPTTFPAGTPVTYTAGSV 513

Query: 540 ISSGGVSFTLTGTPGTTAPDKF 561
           IS GG    ++G P     DKF
Sbjct: 514 ISFGGAEIKISGAPAN--GDKF 533



 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/210 (43%), Positives = 128/210 (60%), Gaps = 10/210 (4%)

Query: 569 NKGTATINAGSVTPAYLTTTTPLTKPTTLTFNNTASPPVFNISPAVPAGGGTITHKDGTT 628
           N GT  I+AG++T A+    + +T P TLT+++ A     N     PAG       +G  
Sbjct: 445 NTGTGAISAGNITSAF--DGSAVTTPVTLTYDSAA-----NTLTGFPAGMPVTVTTNGVP 497

Query: 629 TAIAGGASTLSYTAGDTYEISGVKFQISSQPANGDQFTIAANTNATSDNRNMLAMANLQT 688
           T    G + ++YTAG      G + +IS  PANGD+FTI+ANTN   DNRNMLA+  LQT
Sbjct: 498 TTFPAG-TPVTYTAGSVISFGGAEIKISGAPANGDKFTISANTNGDGDNRNMLALGELQT 556

Query: 689 ANTING--TSFQGSYSQLVATIGNKTNEINVTNTAEKTRLTAIQNQQQSDSGVNQDEELA 746
            N + G   S+  +YSQLV+ +GNKT E+   + +E   L  +Q  QQS+SGVN DEE  
Sbjct: 557 KNVLQGGTASYNSAYSQLVSLVGNKTRELQTNSASEGALLKQMQTAQQSESGVNLDEEAT 616

Query: 747 HMIRNQQQYQAAAKIIQAASDMINALLSLG 776
           +++R QQ YQA+ K++QA SDM + L+SLG
Sbjct: 617 NLLRYQQAYQASGKVMQAVSDMFDVLISLG 646


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.309    0.123    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,454,709
Number of extensions: 53472
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 777
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 686
Effective length of database: 884,594
Effective search space: 606831484
Effective search space used: 606831484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 133 (55.8 bits)