BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1901.p
         (324 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980142|ref|YP_001353116.1| flagellum-specific muramidase [...   352   1e-98

>gi|152980142|ref|YP_001353116.1| flagellum-specific muramidase
           [Janthinobacterium sp. Marseille]
          Length = 316

 Score =  352 bits (904), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 185/334 (55%), Positives = 240/334 (71%), Gaps = 33/334 (9%)

Query: 5   INPS-NPTESLAVDANGLNGLREAAKQNSPEAIKGAAKQFEALFLNMVMKSMRDATPQNG 63
           I P+ N   SLA+DA GL  L+++A+QNSP+++K AAKQFEALF+NM+MKSMR+A+PQ+G
Sbjct: 2   ITPADNSNSSLAIDAKGLESLKQSARQNSPDSLKAAAKQFEALFMNMIMKSMREASPQDG 61

Query: 64  PFDNEQTKMFTSMLDQQLSQSLAQRGVGLADVLTRQLS------------ASLPKKLPDA 111
             DN+QTKM+TSMLDQQLSQ++A RGVGLADVL RQLS            A   K+LPD 
Sbjct: 62  ILDNQQTKMYTSMLDQQLSQNMASRGVGLADVLIRQLSSNQMATAVTSDGADAAKELPDT 121

Query: 112 QDLDGTGQPGEEGVPMGIPLVKDMSEADRAKFIQSFANQQA-ADSTNQDGRNNKQRRNSN 170
            +L                ++++M+E +      + A+Q++ A    Q G        ++
Sbjct: 122 SNLRA-------------EILRNMAERN------ALAHQRSNAAHAAQAGGGAAVASATS 162

Query: 171 KPAHVEAFQNRLQADAEIASKITGIPAKFMLAQAALETGWGKKEIITRDGRSAHNLFGIK 230
           KPAHV+AFQ+++   AE AS+ TGIPAKFM+ QAALE+GWGK+ + T DG S++NLFGIK
Sbjct: 163 KPAHVQAFQDKVAVHAEEASRTTGIPAKFMMGQAALESGWGKRVMRTADGSSSNNLFGIK 222

Query: 231 ATGNWTGKVVEATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQ 290
           A   W GK V+A T EY++G  QKRVEKFRAYDSYAD+F+DYA L+R+NPRYEKVLA+A 
Sbjct: 223 AGPGWKGKTVDAVTTEYVDGVAQKRVEKFRAYDSYADSFRDYAQLMRNNPRYEKVLANAS 282

Query: 291 DAHGFAYGLQRAGYATDPHYAEKLSRIIRQSLSA 324
           DA GFA GLQRAGYATDP+YA KL+ II ++LSA
Sbjct: 283 DAKGFAQGLQRAGYATDPNYATKLTNIINRNLSA 316


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 724,795
Number of extensions: 28668
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 241
Effective length of database: 914,170
Effective search space: 220314970
Effective search space used: 220314970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)