BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1900.p
         (376 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980624|ref|YP_001353115.1| flagellar basal body P-ring pro...   527   e-151

>gi|152980624|ref|YP_001353115.1| flagellar basal body P-ring
           protein [Janthinobacterium sp. Marseille]
          Length = 375

 Score =  527 bits (1357), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/360 (74%), Positives = 312/360 (86%), Gaps = 2/360 (0%)

Query: 17  AALCLAAAVPANAERLKDLASIQGVRQNQLVGYGLVVGLDGSGDQTTQTPFTVQSVISML 76
            ++CL     A++ERLKDLAS+QGVRQNQL+GYGLVVGLDGSGDQTTQTPFT+QS++SM+
Sbjct: 18  CSVCLLLPFAAHSERLKDLASVQGVRQNQLIGYGLVVGLDGSGDQTTQTPFTIQSIVSMM 77

Query: 77  QQLGVNVPTGTSSNMQLKNVAAAMVTATLPAFAQPGQLIDVTVSSIGNAKSIRGGTLLMA 136
           QQ+GVN+P G   NMQLKNVAA MVT +LPAFAQPGQ +D+TVSS+GNAKS+RGGTLLM 
Sbjct: 78  QQMGVNLPQGV--NMQLKNVAAVMVTTSLPAFAQPGQTLDITVSSMGNAKSLRGGTLLMT 135

Query: 137 PLKGADGQIYAIAQGNIVIGGAGGSAAGSSTIINQLSAGRISGGATVERAVPSSLGGGDM 196
           PLKGADGQIY +AQGN+V+GG G +A GS   IN L  GRIS GATVERAVPSSLG GD 
Sbjct: 136 PLKGADGQIYGMAQGNVVVGGVGAAANGSKAQINHLGVGRISAGATVERAVPSSLGQGDQ 195

Query: 197 VVLELNDNDFSTASRVVDALNKRFGSDTAVAQDGRVIRVRAPISSGDRVAFLGALENVDV 256
           +VLEL D+DFSTASRVVDA+NKRFG DTA AQDGRVIRVRAPIS+ +RV+FLGALE+++V
Sbjct: 196 IVLELKDSDFSTASRVVDAVNKRFGPDTAAAQDGRVIRVRAPISNDERVSFLGALESINV 255

Query: 257 TPGKLAAKVILNARTGSVVMNQSVMLETCAVSHGNLSVVIQADNAVSQPNALSGGQTAGV 316
           TP +++AKVILNARTGSVVMNQ+V L+TCAVSHGNLSVVI     +SQP   SGGQT   
Sbjct: 256 TPAQVSAKVILNARTGSVVMNQAVTLDTCAVSHGNLSVVINTQPVISQPAPFSGGQTVVA 315

Query: 317 QNAQVSINKEPGKVMLLKGGASLADVVKALNAIGATPQDLLAILQAMKAAGSLRAELEVI 376
           Q +Q+ INK+PGKV+LLK  ASLADVVKALN+IGATPQDLLAILQAMKA+GSLRAELE+I
Sbjct: 316 QQSQIEINKDPGKVILLKNSASLADVVKALNSIGATPQDLLAILQAMKASGSLRAELEII 375


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.130    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 675,024
Number of extensions: 23509
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 291
Effective length of database: 906,776
Effective search space: 263871816
Effective search space used: 263871816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)