BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1899.p
         (219 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980334|ref|YP_001353114.1| FlgH flagellar basal body L-rin...   240   6e-65

>gi|152980334|ref|YP_001353114.1| FlgH flagellar basal body L-ring
           protein [Janthinobacterium sp. Marseille]
          Length = 222

 Score =  240 bits (612), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 127/217 (58%), Positives = 158/217 (72%), Gaps = 6/217 (2%)

Query: 7   LATIAGVLAVTGCTTVPDSIVTGPKTARPQPAS-YAPPTSGAIFQSAVYRPLLEDRRARL 65
           L   A +LA  GC  +P+++V  P TA+PQ AS   PP +GAIFQ+A YRP+ EDRRARL
Sbjct: 8   LMMFAALLA--GCGGMPETVVQTPLTAKPQSASSITPPMNGAIFQTASYRPMFEDRRARL 65

Query: 66  VGDTLTIVINEKTSAGKSAASSASKTGAVASPAPTIFG---TSIKELSANGSSSAKFDDK 122
           +GDT+TI INE++SAGK A SS SKTG VA+ AP+IFG         SA+ SS++K++DK
Sbjct: 66  IGDTITITINERSSAGKQAGSSGSKTGTVAAAAPSIFGLFGNVTDNFSASASSASKYEDK 125

Query: 123 GATTSSNTFTGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNIQTGNTV 182
           G  TS N F  T+ VTV++VL NGNLVV+GEKQVALDKG E++RFSG V P  +  GN V
Sbjct: 126 GVVTSGNNFVSTLTVTVIDVLSNGNLVVAGEKQVALDKGGEFIRFSGVVDPATVGPGNVV 185

Query: 183 SSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219
           SST VADA++EYRTN R+D A+ MS L RFF SV P 
Sbjct: 186 SSTRVADARIEYRTNARIDAAEVMSMLARFFLSVMPL 222


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.126    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 444,433
Number of extensions: 16266
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 139
Effective length of database: 925,261
Effective search space: 128611279
Effective search space used: 128611279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)