BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1898.p (260 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980126|ref|YP_001353113.1| FlgG flagellar basal body rod p... 420 e-119 gi|152980353|ref|YP_001353112.1| FlgF flagellar basal body rod p... 97 1e-21 gi|152980177|ref|YP_001353111.1| flagellar hook protein FlgE [Ja... 82 3e-17 >gi|152980126|ref|YP_001353113.1| FlgG flagellar basal body rod protein [Janthinobacterium sp. Marseille] Length = 260 Score = 420 bits (1080), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/260 (77%), Positives = 231/260 (88%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 MIRSLWI+KTGLDAQQTQ+DVISNNLANVST+GFKRSRAVFEDLLYQ +RQPGA SSQQT Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTSGFKRSRAVFEDLLYQNIRQPGAASSQQT 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGSF 120 QLPSGLQIGTGVRPVATERI TQGN+ T+N KD+AI G+GFFQ+L+PDGTTAYTRDGSF Sbjct: 61 QLPSGLQIGTGVRPVATERIHTQGNLQLTSNSKDMAILGDGFFQVLMPDGTTAYTRDGSF 120 Query: 121 QTDNQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGTVSIMQAGSTATTQIGTIQVATFIN 180 QTDNQGQ+VTSSG+ +QP I +P N T +++ RDG VS+ G+TA T++G +QVATFIN Sbjct: 121 QTDNQGQMVTSSGFPIQPAIVIPANATAISISRDGIVSVTVPGTTAQTEVGALQVATFIN 180 Query: 181 PAGLESRGENLYVETAASGTPNPNTPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 PAGLES+GENLYVET ASG P N PGTNGAG + Q YVETSNVNVVEE+VNMIQTQRAY Sbjct: 181 PAGLESKGENLYVETTASGNPTTNNPGTNGAGYVQQNYVETSNVNVVEEMVNMIQTQRAY 240 Query: 241 EINSKAITTSDQMLAKISQL 260 EINSKAI+TSDQML +++QL Sbjct: 241 EINSKAISTSDQMLQRLTQL 260 >gi|152980353|ref|YP_001353112.1| FlgF flagellar basal body rod protein [Janthinobacterium sp. Marseille] Length = 246 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 122/267 (45%), Gaps = 32/267 (11%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 M R ++ + +G Q ++NLANVST GF+ F + Sbjct: 1 MDRLIYTAMSGAKQIMEQQSTTAHNLANVSTTGFRAQMDTFRAVPV-------------- 46 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGSF 120 + +GL T V F G + QT DLA+QG G+ + DGT YTR GS Sbjct: 47 -VSNGLPTRTFVVDSTIGTDFRAGPIQQTGRTLDLAVQGPGWLAVERADGTEGYTRSGSL 105 Query: 121 QTDNQGQLVTSSGYTLQP---PITVPLNTTKLTVGRDGTVSIMQAGST--ATTQIGTIQV 175 + + G L T G + PIT+P N K++ +DGT+S + +G+ AT +I ++ Sbjct: 106 KINENGVLQTEGGLNVLADGGPITIPPN-VKISFAKDGTISSVDSGNVPGATIEIARLK- 163 Query: 176 ATFINP--AGLESRGENLYVETAASGTPNPNTPGTNGAGALWQGYVETSNVNVVEELVNM 233 +NP LE + +++ T + + + G +E SNVNVV+ +VNM Sbjct: 164 --LVNPDVGNLERSSDGIFI------TKDRLPADVDANVGVISGAIEGSNVNVVDAMVNM 215 Query: 234 IQTQRAYEINSKAITTSDQMLAKISQL 260 I R +E+N K + +D AK Q Sbjct: 216 ISLARQFELNMKMLKDADSNAAKADQF 242 >gi|152980177|ref|YP_001353111.1| flagellar hook protein FlgE [Janthinobacterium sp. Marseille] Length = 416 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 3/119 (2%) Query: 143 PLNTTKLTVGRDGTVSIMQAGSTATTQI-GTIQVATFINPAGLESRGENLYVETAASGTP 201 P T V DG SIM S + G + +++F NP GL++ G+N +VETA SG P Sbjct: 299 PGTLTGFDVASDG--SIMGRYSNGEVNVLGQVILSSFANPNGLQNIGDNQWVETAESGVP 356 Query: 202 NPNTPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAYEINSKAITTSDQMLAKISQL 260 +TPG++G G + +E SNV++ ELVNMI QR Y+ N++ I T DQ++ + L Sbjct: 357 LTSTPGSSGLGVVQSARIEESNVDLTAELVNMITAQRVYQANAQTIKTQDQIMQTLVNL 415 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 12/127 (9%) Query: 10 TGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQTQLPSGLQIG 69 +GL+A L+ I NN+AN T GFK+S+ F D+ T+ GA QIG Sbjct: 8 SGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAA-----------QIG 56 Query: 70 TGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGSFQTDNQGQLV 129 GV+ ++F+QGN+ +NN D+AI G+GFF+ + G+ Y R+G F+ +G + Sbjct: 57 IGVQVARVAQLFSQGNIAVSNNPLDMAINGDGFFR-MSSGGSITYGRNGQFELTKEGYIQ 115 Query: 130 TSSGYTL 136 +SG L Sbjct: 116 NASGARL 122 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.311 0.127 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 531,039 Number of extensions: 20645 Number of successful extensions: 60 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 4 Length of query: 260 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 179 Effective length of database: 921,564 Effective search space: 164959956 Effective search space used: 164959956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 128 (53.9 bits)