BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1897.p
         (245 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980353|ref|YP_001353112.1| FlgF flagellar basal body rod p...   311   3e-86
gi|152980126|ref|YP_001353113.1| FlgG flagellar basal body rod p...    90   1e-19

>gi|152980353|ref|YP_001353112.1| FlgF flagellar basal body rod
           protein [Janthinobacterium sp. Marseille]
          Length = 246

 Score =  311 bits (796), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 152/248 (61%), Positives = 194/248 (78%), Gaps = 5/248 (2%)

Query: 1   MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPVVGEGLPTRAFVVDS 60
           MDRL+YTAMSGAK  +EQQ++ ++NLAN +TTGFRAQ++TFR+ PVV  GLPTR FVVDS
Sbjct: 1   MDRLIYTAMSGAKQIMEQQSTTAHNLANVSTTGFRAQMDTFRAVPVVSNGLPTRTFVVDS 60

Query: 61  TAGSDFSQGPIQDTGRALDVAVQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQS 120
           T G+DF  GPIQ TGR LD+AVQG GW+AV+ ADG E YTR+GS KINENG+LQT+ G +
Sbjct: 61  TIGTDFRAGPIQQTGRTLDLAVQGPGWLAVERADGTEGYTRSGSLKINENGVLQTEGGLN 120

Query: 121 VQGDGGPITIPPDTTVAIAADGTVSSIPTNGIPNAVNVLGRIKLVNPDEKNLQRGDDGLF 180
           V  DGGPITIPP+  ++ A DGT+SS+ +  +P A   + R+KLVNPD  NL+R  DG+F
Sbjct: 121 VLADGGPITIPPNVKISFAKDGTISSVDSGNVPGATIEIARLKLVNPDVGNLERSSDGIF 180

Query: 181 RTITGAAQP---DANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAEGDASK 237
             IT    P   DANV + SGA+EGSNVNVV+AMVNMI+L+RQFE+NMK+++ A+ +A+K
Sbjct: 181 --ITKDRLPADVDANVGVISGAIEGSNVNVVDAMVNMISLARQFELNMKMLKDADSNAAK 238

Query: 238 ATSILSLS 245
           A   L+LS
Sbjct: 239 ADQFLALS 246


>gi|152980126|ref|YP_001353113.1| FlgG flagellar basal body rod
           protein [Janthinobacterium sp. Marseille]
          Length = 260

 Score = 90.1 bits (222), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 119/265 (44%), Gaps = 29/265 (10%)

Query: 1   MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPV-------------- 46
           M R ++ A +G      Q    SNNLAN +T+GF+     F                   
Sbjct: 1   MIRSLWIAKTGLDAQQTQMDVISNNLANVSTSGFKRSRAVFEDLLYQNIRQPGAASSQQT 60

Query: 47  -VGEGLPTRAFVVDSTAGSDFSQGPIQDTGRALDVAVQGRGWIAVQTADGGEAYTRNGSF 105
            +  GL     V         +QG +Q T  + D+A+ G G+  V   DG  AYTR+GSF
Sbjct: 61  QLPSGLQIGTGVRPVATERIHTQGNLQLTSNSKDMAILGDGFFQVLMPDGTTAYTRDGSF 120

Query: 106 KINENGILQTQNGQSVQGDGGPITIPPD-TTVAIAADGTVS-SIPTNGIPNAVNVLGRIK 163
           + +  G + T +G  +Q     I IP + T ++I+ DG VS ++P       V  L    
Sbjct: 121 QTDNQGQMVTSSGFPIQ---PAIVIPANATAISISRDGIVSVTVPGTTAQTEVGALQVAT 177

Query: 164 LVNPDEKNLQRGDDGLFRTITGAAQPDANVRLASGA-------LEGSNVNVVEAMVNMIN 216
            +NP    L+   + L+   T +  P  N    +GA       +E SNVNVVE MVNMI 
Sbjct: 178 FINP--AGLESKGENLYVETTASGNPTTNNPGTNGAGYVQQNYVETSNVNVVEEMVNMIQ 235

Query: 217 LSRQFEMNMKVIQTAEGDASKATSI 241
             R +E+N K I T++    + T +
Sbjct: 236 TQRAYEINSKAISTSDQMLQRLTQL 260


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 543,994
Number of extensions: 24040
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 164
Effective length of database: 921,564
Effective search space: 151136496
Effective search space used: 151136496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 128 (53.9 bits)