BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1895.p
         (240 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979993|ref|YP_001353110.1| flagellar basal body rod modifi...   196   1e-51

>gi|152979993|ref|YP_001353110.1| flagellar basal body rod
           modification protein [Janthinobacterium sp. Marseille]
          Length = 225

 Score =  196 bits (498), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/238 (44%), Positives = 147/238 (61%), Gaps = 22/238 (9%)

Query: 3   IVSNDLLGAMNGASSTSSTSSSSSLDNNSPDAIQNRFLTLLIAQMKNQDPSNPMDNSQLT 62
           ++   LL  MNGA+++  +++  +         Q+RFL LL+ QM+NQDP NP+DN+Q+T
Sbjct: 10  VLPQSLLDQMNGAAASKKSTAEEA---------QDRFLKLLVTQMQNQDPLNPLDNAQVT 60

Query: 63  SQMAQLSTVSGISQLNNSLSTLMSSINSSQALSTANMIGHSVLAPGNSIQLMSDTSKDAN 122
           SQ+AQLSTV+GI +LN +L +LM +  S+Q L  +NMI H VLAPG+ + L       A 
Sbjct: 61  SQLAQLSTVTGIDKLNGTLESLMGNYQSAQLLQASNMIDHGVLAPGSQLAL-------AE 113

Query: 123 GNDVTSQKAVLGVNLSGTASSVIVTIKDSTGAVVHTTDLGTQAAGAVPVIWDGSNDSGGK 182
           G      KA+ GV       +  + IKDS G VV T D+  Q AGA P++WDG+   G K
Sbjct: 114 G------KAIFGVEFPSDVDAGQIVIKDSAGVVVQTIDMPAQKAGATPLLWDGTKADGTK 167

Query: 183 APDGKYTFTVSASNNGTAVAATALSFGTVSSVSTAADGVKLNVTNVGTIKPTDVVQIL 240
           A DG YTF V  S  G  V ATAL FG V++VS++A+GV LNV  +G +   D+ Q+L
Sbjct: 168 AADGNYTFEVKGSLGGKDVKATALQFGVVTTVSSSANGVLLNVPGLGGLTLADIRQVL 225


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.305    0.118    0.308 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 456,626
Number of extensions: 16158
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 159
Effective length of database: 921,564
Effective search space: 146528676
Effective search space used: 146528676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 128 (53.9 bits)