BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1892.p
         (254 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979911|ref|YP_001353107.1| flagellar basal body P-ring bio...   256   9e-70

>gi|152979911|ref|YP_001353107.1| flagellar basal body P-ring
           biosynthesis protein [Janthinobacterium sp. Marseille]
          Length = 234

 Score =  256 bits (654), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 132/245 (53%), Positives = 171/245 (69%), Gaps = 11/245 (4%)

Query: 10  MKHLLRALRPALAALLLLCGSLGQFSPALAQNDPNTPQKQDLQVVQQVAEQFLKSQTSGL 69
           MKHL      A+AAL L      Q + A A  +P    +QDL V++Q AEQFL+ Q +GL
Sbjct: 1   MKHLFHI---AIAALSLST----QLAWAQAAAEP----RQDLAVLKQTAEQFLQMQANGL 49

Query: 70  PGSVTVTIDPADPRLTLASCLEPQAFMPNGGRLFGRTTVGVKCIAPSPWTIYLRANVQVI 129
           PG V VT+   DPRL L  C  P+AF+P   + +G+TTVGV+C  P+ WTIY+ A V+V 
Sbjct: 50  PGEVKVTVGAIDPRLKLPVCPVPEAFLPPSSKAWGKTTVGVRCNVPTVWTIYVSAQVRVH 109

Query: 130 SDYLVAAVPLAQGQTISASDITRIRGDMSALPSGVLTEESQAIGRVANMSLRAGTPLRMD 189
            +Y+ AA PLAQGQ I   DI +++GD++ LPSGV+T+ SQAIGR A  ++  G PLR D
Sbjct: 110 GEYIAAAAPLAQGQNIGPGDIAKVKGDLTNLPSGVITDASQAIGRTAATTIALGAPLRQD 169

Query: 190 TIRNQRVVQQGQPVRVVSNGPGFQISTEARALTNANEGQMAQARTAAGQVVSGIAKAGGI 249
            +RNQ+ +QQGQ VRV+ NG GF +S+EARAL NANEGQ+ Q RTAAGQV+SGIAK GGI
Sbjct: 170 ALRNQQAIQQGQAVRVILNGDGFSVSSEARALNNANEGQLTQVRTAAGQVISGIAKLGGI 229

Query: 250 LEINY 254
           +E+ Y
Sbjct: 230 VELAY 234


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 492,527
Number of extensions: 18102
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 173
Effective length of database: 921,564
Effective search space: 159430572
Effective search space used: 159430572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)