BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1891.p
         (106 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982925|ref|YP_001353106.1| negative regulator of flagellin...    73   3e-15

>gi|152982925|ref|YP_001353106.1| negative regulator of flagellin
           synthesis [Janthinobacterium sp. Marseille]
          Length = 128

 Score = 73.2 bits (178), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 65/107 (60%), Gaps = 10/107 (9%)

Query: 1   VNVNDALKSAALNTEQTQTQTR-NNAQAGAASGNGAPAAAAASDSVRLSSTYQALETKVN 59
           V +NDA K  A       TQTR   A   A +G         S +V LSS  QAL ++V 
Sbjct: 31  VKINDASKKIA-GVGVAATQTRAGKAPEKADTGK-------VSSNVTLSSQVQALTSQVA 82

Query: 60  SNSSSFDAKKVAEIKAAIANGTFQIDPEKVANGLIDTVKTLISARQA 106
           S +S FDAKKV EIKAAIA G FQ++ E+VA+GL+DTVK LIS R+ 
Sbjct: 83  S-ASVFDAKKVDEIKAAIAGGQFQVNAERVADGLMDTVKDLISTRKG 128


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.302    0.114    0.284 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 102,311
Number of extensions: 1650
Number of successful extensions: 4
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 36
Effective length of database: 962,231
Effective search space: 34640316
Effective search space used: 34640316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 123 (52.0 bits)