BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1888.p
         (267 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980387|ref|YP_001353774.1| FleN flagellar synthesis regula...   188   4e-49

>gi|152980387|ref|YP_001353774.1| FleN flagellar synthesis regulator
           [Janthinobacterium sp. Marseille]
          Length = 234

 Score =  188 bits (477), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/233 (45%), Positives = 152/233 (65%), Gaps = 5/233 (2%)

Query: 24  MLINLAASLAQAKHSVLVVDGDVASTGLLTRIGLRHDVATLQEVARMERTLAEATRRLPE 83
           ML+NL+ASLA +   V+++D   ++ G+  R+G+    ATL +VAR ER L +    +P+
Sbjct: 1   MLVNLSASLALSGSDVVLLDACASNDGISQRMGVELQ-ATLLDVARQERALNQVVHAMPQ 59

Query: 84  GFSMARIARRSVPQANDPDAG---RLAEIFDSLIEQAEITLVNGVLARDESLPVPTMEMG 140
           GF +A + R S+  A D D     RL+  F  L  Q+++ +V+  L  D+S  +P M  G
Sbjct: 60  GFGLASLTRGSL-HAADGDRHQQRRLSNAFGVLAAQSDVLMVDAELDADDSFAIPAMANG 118

Query: 141 EIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDATEAEARTVYANMAQAASRYLA 200
           EI++QV+  A+SIK AY L+K L+ ++GRRPF ++V  A E EA  VY NMAQAASRYLA
Sbjct: 119 EIIVQVAPGAASIKKAYALIKRLNAQLGRRPFGILVTGADEQEAAVVYQNMAQAASRYLA 178

Query: 201 AQLNFLGSIPADDHIRRATGQGRAVMDVFPFAGAALAFQRLSKRFTAGADSAR 253
            QL+ +G +P DDH+ RA   GRAV+D FP AGA++AF+ L++RF   A  A+
Sbjct: 179 LQLHSVGFVPRDDHLTRAARLGRAVIDAFPLAGASVAFRGLAERFALPAHGAK 231


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 544,498
Number of extensions: 19971
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 185
Effective length of database: 917,867
Effective search space: 169805395
Effective search space used: 169805395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)