BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1887.p
         (493 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980692|ref|YP_001353775.1| flagellar biosynthesis regulato...   498   e-142

>gi|152980692|ref|YP_001353775.1| flagellar biosynthesis regulator
           FlhF [Janthinobacterium sp. Marseille]
          Length = 421

 Score =  498 bits (1282), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/321 (74%), Positives = 271/321 (84%)

Query: 173 LSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPA 232
           L+ +MSEIRSMRG+LE QL+E++W   QKREP+K  VL+EMLAAGFSASL+R +   LPA
Sbjct: 101 LNNMMSEIRSMRGMLEIQLSELAWNDPQKREPVKSTVLREMLAAGFSASLARYLIARLPA 160

Query: 233 NSKSQDIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRH 292
            + +Q  M W+KS+LARNL T+ +ENE+LE GGV+ALVGPTGVGKTTTTAKLAARCVMRH
Sbjct: 161 GASNQSGMEWIKSILARNLATIGDENEILEKGGVYALVGPTGVGKTTTTAKLAARCVMRH 220

Query: 293 GSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAG 352
           G  KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE DLRIAL+ELKGKHTVLIDT G
Sbjct: 221 GPSKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDEADLRIALDELKGKHTVLIDTVG 280

Query: 353 VGQRDQMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEA 412
           V QRDQMVA+Q AML GAG  +KRLLCLNAT+TG TLNEVV +Y   GLAGCI+TKLDEA
Sbjct: 281 VSQRDQMVADQIAMLTGAGDQVKRLLCLNATSTGETLNEVVRSYMGDGLAGCILTKLDEA 340

Query: 413 ATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELP 472
           ATIG+ LDVVIR KLNL+YVANGQRVPEDLHVAN+ YL DRAFK KRETAPF+  + E+P
Sbjct: 341 ATIGSALDVVIRQKLNLYYVANGQRVPEDLHVANQQYLVDRAFKLKRETAPFQLGDAEIP 400

Query: 473 GVIGPTAMSMNDKGLREVSFG 493
            V+  T   MNDK LREV  G
Sbjct: 401 AVMANTVRGMNDKSLREVILG 421



 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 58/95 (61%), Gaps = 8/95 (8%)

Query: 1  MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60
          MNV+KF A++SR AW  VREALGPDAVILSNR I  GVEILA+A EDM +L  P   R  
Sbjct: 1  MNVRKFTASTSRGAWSLVREALGPDAVILSNRAIDGGVEILALAGEDMASLAEPMVERAA 60

Query: 61 NARPPAASL--QQQSGQPAAQQPKRPALLSSPVAQ 93
           +    ASL    +  QPA      P  L+S  AQ
Sbjct: 61 ISETTLASLVPHHKPSQPA------PLALTSNAAQ 89


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 959,218
Number of extensions: 35699
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 3
Length of query: 493
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 406
Effective length of database: 899,382
Effective search space: 365149092
Effective search space used: 365149092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)