BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1886.p
         (702 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979994|ref|YP_001353776.1| FlhA flagellar biosynthesis pro...  1088   0.0  

>gi|152979994|ref|YP_001353776.1| FlhA flagellar biosynthesis
           protein [Janthinobacterium sp. Marseille]
          Length = 694

 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/698 (78%), Positives = 619/698 (88%), Gaps = 6/698 (0%)

Query: 5   LNTMKIPAWVPVKSGRALAAPILIVMMLAMMVLPLPAFMLDLLFSFNISLSVIVLMTALY 64
           +N++K+PAW+  +  RA+AAP++I+MML+MMVLPLPA +LD+ FSFNI+LS+IVL+TALY
Sbjct: 1   MNSLKLPAWMTGQGSRAVAAPLIIIMMLSMMVLPLPAIVLDIFFSFNIALSIIVLLTALY 60

Query: 65  TVKPLDFIAFPAVLLVSTMLRLSLNVASTRIVLTEGHTGPDAAGKVIEAFGHFLIGGNYT 124
           TVKPLDF+ FP VLLVSTMLRLSLNVASTR+VLTEGH GPDAAGKVIEAFGHFLIGGNYT
Sbjct: 61  TVKPLDFMVFPTVLLVSTMLRLSLNVASTRVVLTEGHNGPDAAGKVIEAFGHFLIGGNYT 120

Query: 125 VGIVVFVILTIINFMVVTKGAGRIAEVGARFTLDAMPGKQMAIDADLNAGLIGEPEARAR 184
           VGIVVFVILTIINF VVTKGAGRIAEVGARF LDAMPGKQMAIDADLNAGLIGE +AR R
Sbjct: 121 VGIVVFVILTIINFTVVTKGAGRIAEVGARFALDAMPGKQMAIDADLNAGLIGEQDARLR 180

Query: 185 RKEVAQESEFYGAMDGASKYVRGDAVAGIIVTVVNIVGGLVVGMVQHDLAFDAALKNYTL 244
           R +VAQE+EFYGAMDGASKYVRGDA+AGIIVTV+N+VGGLVVGMVQHD+ F AAL+NYTL
Sbjct: 181 RTQVAQEAEFYGAMDGASKYVRGDAIAGIIVTVINVVGGLVVGMVQHDMGFSAALENYTL 240

Query: 245 LAIGDGLVAQIPSLIISTAAGVVVSRVANDQDVGGQLINQLFAKPEVLYITAVIIGGMGL 304
           LAIGDGLVAQIPSLIISTAAG+VVSRVA++QD+GGQL+ QLFA+P+VLYITA IIGGMGL
Sbjct: 241 LAIGDGLVAQIPSLIISTAAGIVVSRVASEQDIGGQLVGQLFARPQVLYITAAIIGGMGL 300

Query: 305 IPGMPHIAFILLAAAMGGGAYAIGKRVEKTKAEAAAAAPQATASAAAPAEGEEATWSDVM 364
           IPGMPH++F+ LA+ M G AY I +R      +A    P+ TA   AP E EEATW D++
Sbjct: 301 IPGMPHVSFLFLASLMAGAAYLISQR----NLKAPEVEPEVTAPPPAP-EVEEATWQDIV 355

Query: 365 PVDTLGLEVGYRLIPLVDKGQGGELLKRIKGIRKKFAQEVGFLSPPIHIRDNLELKPSAY 424
            VDTLGLEVGYRLIPLVDK Q GELL+RIKGIRKKFAQEVGFLSPP+HIRDNLELKPSAY
Sbjct: 356 QVDTLGLEVGYRLIPLVDKSQSGELLRRIKGIRKKFAQEVGFLSPPVHIRDNLELKPSAY 415

Query: 425 RITLKGVEVGNGEAHAGQYLAINPGMVTGPLPGMMTSDPAFGLPAVWIDNSLREQASTMG 484
           RITLKGVEVG+GEA AGQ+LAINPGMV+G LPG  TSDPAFGLPA WID+S+REQA  MG
Sbjct: 416 RITLKGVEVGSGEALAGQFLAINPGMVSGTLPGPTTSDPAFGLPATWIDSSMREQAQGMG 475

Query: 485 YTVVDAGTVVATHLNHLITTHAAELLGRQEVQSLLDHLGKEAPKLVEDLVPKMLPLGTLQ 544
           YTVVDAGTVVATHLNHLITTHAAELLGRQEVQ LLDHL KE+PKLVEDLVPK++PL TLQ
Sbjct: 476 YTVVDAGTVVATHLNHLITTHAAELLGRQEVQQLLDHLTKESPKLVEDLVPKLIPLSTLQ 535

Query: 545 KVLQNLLAEGVHIRDMRTIIETLAEHAARIQDPTDLTAIVRIALGRAIVQQIFPGESELA 604
           KVLQNLL EGVHIRDM TIIET+ EHAA IQD  +LTA+VR+ALGRAIVQQ+FP  +EL+
Sbjct: 536 KVLQNLLIEGVHIRDMHTIIETMTEHAAYIQDVNELTALVRVALGRAIVQQLFPSTNELS 595

Query: 605 VMALDSKLERLLMQALQASG-DSGGIEPGLADSLVQQTEMAAQRQEQMGFAPVLLVGAPL 663
           VM LD++LERLL QALQ SG D  GIEPGLAD++  Q E A ++QE +G  PVLLV A L
Sbjct: 596 VMTLDNRLERLLTQALQGSGPDGAGIEPGLADTIAAQAEAATRQQESLGLTPVLLVPAQL 655

Query: 664 RTLLARFLRRALPQLRVLSHAEVPESKTIKVTSLVGGQ 701
           R LLARFLRRALPQL+VLSHAEVP+SKTI+VTSLVGGQ
Sbjct: 656 RALLARFLRRALPQLKVLSHAEVPDSKTIRVTSLVGGQ 693


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,335,952
Number of extensions: 51001
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 612
Effective length of database: 888,291
Effective search space: 543634092
Effective search space used: 543634092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)