BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1885.p (391 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980271|ref|YP_001353777.1| FlhB flagellar biosynthetic pro... 464 e-132 gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444 [... 65 1e-11 >gi|152980271|ref|YP_001353777.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp. Marseille] Length = 402 Score = 464 bits (1194), Expect = e-132, Method: Compositional matrix adjust. Identities = 220/375 (58%), Positives = 288/375 (76%) Query: 1 MAEDSDMERTEPATGKRIERAREQGDVPRSRELATTLMLLVGGSCVWLFSGPVVTSLDRI 60 +AE+SD+E+TEPA+ +++E+AREQGDVPRSRELAT +LL G+ W+ G +V L+++ Sbjct: 13 LAEESDLEKTEPASPRKLEQAREQGDVPRSRELATCTLLLGAGAAFWILGGRMVGELNKM 72 Query: 61 LVATMSFERAAAFDPVVMFNMLSAHLIDVAVALIPLAFLMTLAAMAAPLMLGGWLFNVQS 120 L A +SF+R AFD ++ +A +ID+ +A P A ++ + A+ +P ++GGWLF+ ++ Sbjct: 73 LAAGLSFDREMAFDMELLLAHAAASIIDLLIAFAPAALILIVVALISPALIGGWLFSGKA 132 Query: 121 LAPKFGKLNPISGFANMFSINSLVELGKAVLKTVLVGTVAWVAIRGQLDAVVGLGVESLK 180 L P FG++NPI G NM S + VELGKA+ KT+L+G +AW+ +R + DAV+ L VE LK Sbjct: 133 LQPNFGRMNPIKGLGNMVSSRAAVELGKAIAKTILIGWIAWMVMRHEFDAVMALSVEPLK 192 Query: 181 TAGAHSAYLLWVSFITIVSALVLIAALDVPYQIWNYGRKLRMTREEVKQEHKESEGDPHI 240 + H +LL SFI I + LV++AA+D PYQ+W + +KL M+R++V+QE KESEG+P I Sbjct: 193 SGTEHLGHLLVFSFIFIAAGLVIVAAIDAPYQMWQHAKKLMMSRQDVRQESKESEGNPEI 252 Query: 241 KGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYTEGKMGAPKVVAKGADDIAAK 300 K KIR QR MARRRMMAEVPTADVVVTNPTHYAVALKY+E M AP+VVAKGAD++AAK Sbjct: 253 KAKIRQQQREMARRRMMAEVPTADVVVTNPTHYAVALKYSENGMRAPRVVAKGADEVAAK 312 Query: 301 IRELAREHKVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLRTYGKFGGNR 360 IRELA E+ V LLEAPPLARAL H E+GDEIPEALY AVAEVLAYVFQLR Y K GG R Sbjct: 313 IRELAMENNVVLLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLRAYSKHGGAR 372 Query: 361 PVEPTELNVPKELDP 375 PV+P +L VP E+DP Sbjct: 373 PVKPGDLEVPPEMDP 387 >gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444 [Janthinobacterium sp. Marseille] Length = 95 Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 268 TNPTHYAVALKYTEGKMGAPKVVAKGADDIAAKIRELAREHKVPLLEAPPLARALHTHTE 327 T P AVAL Y + AP+VVAKG IA +I E A+EH V + E+ L AL E Sbjct: 4 TTPPQQAVALAY-QSNDSAPRVVAKGRGAIAEQIIERAKEHGVAIHESKELV-ALLLQVE 61 Query: 328 IGDEIPEALYTAVAEVLAYVFQLRTYGKFGGN 359 + + IP ALY AVAE+LA+++++ + GGN Sbjct: 62 LDEHIPPALYRAVAELLAWLYRVEAAQQGGGN 93 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 821,077 Number of extensions: 29872 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 2 Length of query: 391 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 306 Effective length of database: 906,776 Effective search space: 277473456 Effective search space used: 277473456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)