BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1884.p
         (216 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980356|ref|YP_001353779.1| chemotaxis regulator CheZ [Jant...   255   1e-69
gi|152981520|ref|YP_001352776.1| CheZ chemotaxis protein [Janthi...   151   3e-38

>gi|152980356|ref|YP_001353779.1| chemotaxis regulator CheZ
           [Janthinobacterium sp. Marseille]
          Length = 235

 Score =  255 bits (652), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 162/198 (81%), Gaps = 1/198 (0%)

Query: 20  EEVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATE 79
           +E++ R+GHMTR LH+SLRGLGFD+L+E+A+ D+PDARDRL+YVARMTEQAAQRVLNATE
Sbjct: 38  DEMVSRVGHMTRALHESLRGLGFDQLIERASHDIPDARDRLDYVARMTEQAAQRVLNATE 97

Query: 80  LASPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLD 139
            A PLQE++  GA+ +  QW  A  G FSEA Y+ALA +T A L      ++ T+Q L++
Sbjct: 98  AAGPLQEQVQSGAAAMATQWQQALQGGFSEAKYKALAEQTIAHLNATQSATTETRQHLMN 157

Query: 140 IMMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSPSETKRE-DGGLLNGPQIDPAGK 198
           IMMAQDFQDLTGQVIK+VT+LAH LE QL+QLLVDY+P+E K+E + GLLNGPQI+P G 
Sbjct: 158 IMMAQDFQDLTGQVIKKVTELAHGLEQQLLQLLVDYAPAEKKKEVETGLLNGPQINPTGN 217

Query: 199 DVIANQGQVDDLLESLGF 216
           DV+A Q QVDDLLESLGF
Sbjct: 218 DVVAGQEQVDDLLESLGF 235


>gi|152981520|ref|YP_001352776.1| CheZ chemotaxis protein
           [Janthinobacterium sp. Marseille]
          Length = 263

 Score =  151 bits (382), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 119/197 (60%), Gaps = 9/197 (4%)

Query: 25  RIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATELASPL 84
           R+G + R LHDSLR LG+DR L   AS++ DA+ RLEYVA +TEQAA +VLNA ++  P 
Sbjct: 71  RLGGIVRLLHDSLRELGYDRSLSNVASEITDAQGRLEYVATLTEQAANKVLNAIDVGMPE 130

Query: 85  QERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLDIMMAQ 144
           Q+ +   A ++ A+W     G  S  +++ LA  +  F  +  E +   K +LL+IMMAQ
Sbjct: 131 QDALSKSAKDMDARWAQLFEGKLSVDEFKTLANDSRQFAGKVTEVTEAEKARLLEIMMAQ 190

Query: 145 DFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSPSETK-----REDGGLLNGPQIDPAGKD 199
           DFQD+TGQ+IK++  + H  ES+L QLL D +P E K      +   L+NGP   PA   
Sbjct: 191 DFQDITGQLIKKIVAITHKAESELAQLLRDNAPPEVKAAHPENKPVELMNGPSA-PA--- 246

Query: 200 VIANQGQVDDLLESLGF 216
           +   Q  VD LL  LGF
Sbjct: 247 IAMVQDDVDSLLADLGF 263


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 444,402
Number of extensions: 15970
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 137
Effective length of database: 928,958
Effective search space: 127267246
Effective search space used: 127267246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)