BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1883.p (131 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthi... 249 4e-68 gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthi... 86 1e-18 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 74 3e-15 gi|152982806|ref|YP_001353651.1| hypothetical protein mma_1961 [... 74 4e-15 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 74 4e-15 >gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 132 Score = 249 bits (636), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 120/131 (91%), Positives = 124/131 (94%) Query: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60 M+GPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDG AL KLRS+QFDFVVSDWNM Sbjct: 1 MAGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAMALAKLRSEQFDFVVSDWNM 60 Query: 61 PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120 PNMDGLTMLQ IR DPALSKLPVLMVTAEAKKENI+AAAQAGANGYVVKPFTAATLDEKL Sbjct: 61 PNMDGLTMLQHIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKL 120 Query: 121 GKIFEKMAAGG 131 KIFEK+AA G Sbjct: 121 AKIFEKLAAAG 131 >gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille] Length = 121 Score = 85.5 bits (210), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLT 67 L VDD ++R++V L+ GY V EA DG L K ++ FD V++D NMP MDG + Sbjct: 5 ILAVDDSGSLRQMVVFSLRAAGY-QVTEAVDGQDGLDKAKTQVFDLVLTDQNMPRMDGFS 63 Query: 68 MLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 124 +++ +R K+P+L++T E+ E AGANG++VKPF L E + K+ Sbjct: 64 LIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 73.9 bits (180), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 1/103 (0%) Query: 7 KFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGL 66 K LVVDD T+R + R LL GY V A DG+ +R++ FD V++D +MP MDG+ Sbjct: 636 KVLVVDDSLTVRELERKLLSNCGYQVV-VAVDGMDGWNAVRTEHFDLVITDIDMPRMDGI 694 Query: 67 TMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVK 109 ++ IR+ L LPV++V+ + ++E+ AGA+ Y K Sbjct: 695 ELVSLIRQAANLQSLPVMIVSYKDREEDRQRGLDAGADYYFTK 737 >gi|152982806|ref|YP_001353651.1| hypothetical protein mma_1961 [Janthinobacterium sp. Marseille] Length = 542 Score = 73.6 bits (179), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Query: 7 KFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM-PNMDG 65 + LVVDD TMR+ +R L +LG VD++ A++++R+ +D +V D+N+ +G Sbjct: 13 RALVVDDMPTMRQNIRTQLGQLGIEQVDQSATPNDAIKRIRNTNYDVIVCDYNLNKETNG 72 Query: 66 LTMLQEIRKDPALSKLPV-LMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 124 +L+ +R LS + MVTAE+ +++ +AA+ + Y+VKP T + ++L ++ Sbjct: 73 QQVLEYLRSQKLLSPTAMFFMVTAESSYDSVASAAEFQPDAYMVKPLTGGKIADRLERLL 132 Query: 125 EKMAA 129 ++ A Sbjct: 133 DRQQA 137 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 73.6 bits (179), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 9 LVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLTM 68 +VVDD T+RR+ + LL GY V A+DGV ALQ L+S D ++ D MP MDG + Sbjct: 1780 MVVDDSLTVRRVTQRLLTREGY-QVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDL 1838 Query: 69 LQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEK 126 + IR D +P++M+T+ ++ A + G N Y+ KP+ L E + K Sbjct: 1839 TRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQEDVLLELIAGFVAK 1896 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 280,341 Number of extensions: 9794 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 34 Length of query: 131 Length of database: 1,221,021 Length adjustment: 73 Effective length of query: 58 Effective length of database: 951,140 Effective search space: 55166120 Effective search space used: 55166120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)