BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1882.p (359 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980521|ref|YP_001353781.1| chemotaxis-specific methylester... 615 e-177 gi|152980555|ref|YP_001351703.1| chemotaxis-specific methylester... 162 3e-41 gi|152982572|ref|YP_001351845.1| two-components system response ... 64 1e-11 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 63 3e-11 gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 59 6e-10 >gi|152980521|ref|YP_001353781.1| chemotaxis-specific methylesterase [Janthinobacterium sp. Marseille] Length = 359 Score = 615 bits (1586), Expect = e-177, Method: Compositional matrix adjust. Identities = 301/359 (83%), Positives = 327/359 (91%), Gaps = 1/359 (0%) Query: 2 MKIKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPR 61 MKIKVLIVDDSALIRSVM+EII SQPDMEVVGVAPDPI+AR+LIKQTNPDVLTLDVEMPR Sbjct: 1 MKIKVLIVDDSALIRSVMKEIINSQPDMEVVGVAPDPIVARDLIKQTNPDVLTLDVEMPR 60 Query: 62 MDGLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYAD 121 MDGLDFLEKLMRLRPMPVVMVSSLTERGS+ITLRALELGA+DFVTKPK+SIQSGM EY + Sbjct: 61 MDGLDFLEKLMRLRPMPVVMVSSLTERGSDITLRALELGAVDFVTKPKMSIQSGMLEYTE 120 Query: 122 MIADKIRAAAKARVRARPSRSAEQATTSGE-VLPQIRNPLTSSEKLIIIGASTGGTEAIK 180 +IADKIR A+KAR+++R + +G+ VLP IRNPLTSSEKLIIIGASTGGTEAIK Sbjct: 121 LIADKIRTASKARIKSRQITPHDPNKVAGDGVLPLIRNPLTSSEKLIIIGASTGGTEAIK 180 Query: 181 EFLIRMPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHS 240 +FL++MPSDCPGILITQHMP GFT+SFAQRL++LCKISV ES G ERVLPGHAY+APGHS Sbjct: 181 DFLMQMPSDCPGILITQHMPPGFTKSFAQRLDSLCKISVKESEGGERVLPGHAYLAPGHS 240 Query: 241 HLKLVRSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGML 300 HL+LVRSGANYMTQLDQGPPVNRHRPSVDVLF SAA AGKNAVGVILTGMGKDGA GML Sbjct: 241 HLQLVRSGANYMTQLDQGPPVNRHRPSVDVLFHSAAVHAGKNAVGVILTGMGKDGALGML 300 Query: 301 EMRNAGAYNFAQDEASCVVFGMPREAIAVGAAHEVLSLQAMPGRVLAWLAEHGSRALRV 359 EM+N GAYNFAQDEASCVVFGMPREAIAVGA HEV L A+PG VL +LA H SRALRV Sbjct: 301 EMKNVGAYNFAQDEASCVVFGMPREAIAVGATHEVGPLNALPGMVLGYLAAHSSRALRV 359 >gi|152980555|ref|YP_001351703.1| chemotaxis-specific methylesterase [Janthinobacterium sp. Marseille] Length = 336 Score = 162 bits (410), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 104/345 (30%), Positives = 178/345 (51%), Gaps = 15/345 (4%) Query: 4 IKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMD 63 +K+ IV+D ++ ++R + P +++ VA D I A E+ PD++ +D+ MP D Sbjct: 1 MKIGIVNDVPMVVEILRRALAEHPQHQLIWVAQDGIQAAEMCAWQLPDIVLMDIIMPNAD 60 Query: 64 GLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADMI 123 G++ ++M+ P P+++V++ + AL GA+D VT P ++ + Q A +I Sbjct: 61 GVEATRRIMQKTPCPILLVTADISANAVKVYEALGHGALDVVTTPVMTGGNFQQGAAALI 120 Query: 124 ADKIRAAAKARVRARPSRSAEQATTSGEVLPQIRNPLTSSEKLIIIGASTGGTEAIKEFL 183 A KI A+ + ++A + P S +L++IGAS GG A+ E L Sbjct: 121 A-KIEKVARMGKKVEAPVPVKKAAVVRDADP--------STRLVVIGASAGGPAALAELL 171 Query: 184 IRMPSDCPG-ILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHL 242 +P+D P ++I QH+ F A L + V + ++ L G +IA + HL Sbjct: 172 RGLPADFPAAVVIVQHINPAFVDGMADWLQQQTALRVRVAKEGDQPLSGTVFIAGTNQHL 231 Query: 243 KLV-RSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLE 301 + R Y+ Q P + + PS+DVLF S AVGV+LTGMG+DGA G+ Sbjct: 232 LIKNRDSLGYV----QEAPTDIYHPSIDVLFHSVVQQWQGKAVGVLLTGMGRDGALGLKA 287 Query: 302 MRNAGAYNFAQDEASCVVFGMPREAIAVGAAHEVLSLQAMPGRVL 346 M + + QD+ S V+GMP+ A+A+ AA ++L + + +++ Sbjct: 288 MHDNKYHTIVQDQESSSVYGMPKAAVALNAATDILPVSGIAQKLV 332 >gi|152982572|ref|YP_001351845.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 238 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 12/162 (7%) Query: 6 VLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMDGL 65 +L+VDD IR ++ EI+G + VV A + AREL PD++ LD+ MP DG+ Sbjct: 4 ILVVDDEMGIRELLSEILGDEG--HVVATAENAQQARELRAAAKPDLVLLDIWMPDTDGV 61 Query: 66 DFLEKLMR--LRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADMI 123 L++ R + MPV+M+S + + A +GA++F+ KP IS+Q ++ + Sbjct: 62 TLLKEWQRDGMLTMPVIMMSG--HATIDTAVEATRIGALNFLEKP-ISLQKLLKAVQQGL 118 Query: 124 ADKIRAAAKARVRARPSRSAEQATTSGEVLPQIRN-PLTSSE 164 R R+ + P R+ AT S LPQ + P +SS+ Sbjct: 119 T---RGQEVTRIASMPVRAPIAATDSHH-LPQDKVLPASSSQ 156 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 65/106 (61%), Gaps = 7/106 (6%) Query: 6 VLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMDGL 65 V++VDDS +R V + ++ ++ +VV +A D + A + ++ PDV+ +D+EMPRMDG Sbjct: 1779 VMVVDDSLTVRRVTQRLL-TREGYQVV-LAKDGVDALQHLQSVTPDVMLVDIEMPRMDGF 1836 Query: 66 DFLEKLM---RLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKP 108 D + R R +P++M++S T S+ A+ELG +++ KP Sbjct: 1837 DLTRNIRDDERTRDIPIIMITSRT--ASKHRNYAMELGVNEYLGKP 1880 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 58.5 bits (140), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 4 IKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMD 63 IKVLI DD A++R +++I+ D+ V G A + I A +L ++ VL LD+ MP Sbjct: 7 IKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISMPDRS 66 Query: 64 GLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTK 107 G++ L+++ + P V++ S+ R + +R+L+ GA ++ K Sbjct: 67 GIEVLKQVKKESPKIAVLMLSM-HREDQYAIRSLKAGASGYLNK 109 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 781,243 Number of extensions: 30817 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 8 Length of query: 359 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 275 Effective length of database: 910,473 Effective search space: 250380075 Effective search space used: 250380075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)