BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1881.p
         (201 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979864|ref|YP_001353782.1| chemoreceptor glutamine deamida...   335   9e-94

>gi|152979864|ref|YP_001353782.1| chemoreceptor glutamine deamidase
           CheD [Janthinobacterium sp. Marseille]
          Length = 203

 Score =  335 bits (860), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 185/202 (91%), Gaps = 1/202 (0%)

Query: 1   MSQAS-EQIATNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIG 59
           MS+ + E  ATN+YYDRTFD DAAKILPGEYY+T KDM+IVTVLGSCVSACIRDRV+G+G
Sbjct: 1   MSELTKEHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVG 60

Query: 60  GMNHFMLPDGGGDDGSPISASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGF 119
           GMNHFMLPDGGGD  SPISASARYGTYAME+LIND+LK+GARRENLEAKVFGGGNVL GF
Sbjct: 61  GMNHFMLPDGGGDADSPISASARYGTYAMEILINDLLKAGARRENLEAKVFGGGNVLSGF 120

Query: 120 SAINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLV 179
           S+INVGERNA+FVR +LK ENIR+VAEDLND++PRKVY+FPR GKVLVKKL+Q++NNTLV
Sbjct: 121 SSINVGERNAQFVRNFLKVENIRIVAEDLNDVHPRKVYYFPRNGKVLVKKLRQLNNNTLV 180

Query: 180 DREKAYASKLVTKPVGGEVDLF 201
           +RE+ YA++L +  V G+V+LF
Sbjct: 181 NREQDYANRLQSGSVSGDVELF 202


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 409,273
Number of extensions: 14423
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 122
Effective length of database: 928,958
Effective search space: 113332876
Effective search space used: 113332876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)