BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1880.p
         (290 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979933|ref|YP_001353783.1| CheR chemotaxis protein methylt...   456   e-129
gi|152980502|ref|YP_001351706.1| CheR chemotaxis protein methylt...    67   9e-13

>gi|152979933|ref|YP_001353783.1| CheR chemotaxis protein
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 292

 Score =  456 bits (1172), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 212/286 (74%), Positives = 246/286 (86%), Gaps = 1/286 (0%)

Query: 1   VKPTVPGKGESSGKEFDFNSRDFERVRGLIYQRAGIALADSKQEMVYSRLARRLRATGIT 60
           +K T  G+ E S KEF+F +RDFERVR LI+++AGIALA+SKQEMVYSRLARRLRATGI 
Sbjct: 1   MKTTTQGRAEGS-KEFEFTARDFERVRALIHKKAGIALAESKQEMVYSRLARRLRATGIG 59

Query: 61  SFQQYLDMLERTHDADEWEAFTNALTTNLTSFFREAHHFPILADFLKTLKEPATIWCSAA 120
           SF  YLD LE+    +EWEAFTNALTTNLTSFFREAHHFPILAD +K +KEP  IWCSAA
Sbjct: 60  SFVSYLDQLEQGGSDEEWEAFTNALTTNLTSFFREAHHFPILADHIKKIKEPIEIWCSAA 119

Query: 121 STGEEPYTIAMTACEAYGSMNPPVQIVATDIDTNVLSTGANGVYPMERIEKMSPERVKKF 180
           STGEEPY+IAMTACEA+ ++ PPV+I+ATDIDTNVL+TGANGVY ++R++KMSPER K+F
Sbjct: 120 STGEEPYSIAMTACEAFNTLTPPVRIIATDIDTNVLNTGANGVYSIDRLDKMSPERAKRF 179

Query: 181 FLRGKGSHEGYVRVRPELRKLITFKQLNLLADSWPISGQFDVIFCRNVMIYFDKPTQSKI 240
           FLRGKG+ EG VRVRPELR++ITFKQ+NLL  +W ISGQFD IFCRNVMIYFDKPTQ KI
Sbjct: 180 FLRGKGAREGMVRVRPELRQMITFKQVNLLESNWGISGQFDAIFCRNVMIYFDKPTQGKI 239

Query: 241 LSRFVPLMKPHALLFAGHSENFLYVSDALKLKGKTVYELNATQRGA 286
           L RF PLMKP  LLFAGHSENFLYV+DA KL+GKTVYEL+  ++  
Sbjct: 240 LDRFAPLMKPDGLLFAGHSENFLYVTDAFKLRGKTVYELDPNKKAG 285


>gi|152980502|ref|YP_001351706.1| CheR chemotaxis protein
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 424

 Score = 67.4 bits (163), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 16/245 (6%)

Query: 23  FERVRGLIYQRAGIALADSKQEMVYSRLARRLRATGITSFQQYLDMLERTHDADEWEAFT 82
             R+  L+    G+ +A     ++   ++ R+   G+T    YL  L+      E +   
Sbjct: 4   LNRIASLLRHSMGLDVASVGMMLIERAVSERMLTLGMTQ-DAYLLALQSA--PGELQELI 60

Query: 83  NALTTNLTSFFREAHHFPILADFLK--TLKEP---ATIWCSAASTGEEPYTIAMTACEAY 137
             +    T FFR+      LA   +    ++P     +     STGEEPY++AM   +A 
Sbjct: 61  ELVIVPETWFFRDREAILSLARMARQQIAEKPDRCVRVLSLPCSTGEEPYSVAMALLDA- 119

Query: 138 GSMNPPVQIVATDIDTNVLSTGANGVYPMERIE-KMSPERVKKFFLRGKGSHEGYVRVRP 196
           G  +    I A DI    L+    GVY       K+   R + F      + +   R+  
Sbjct: 120 GVPSVNFHIDAIDICHRSLAIAERGVYGRNSFRGKLLDYRDRHF-----DTSKDEARLSE 174

Query: 197 ELRKLITFKQLNLLADSWPISGQ-FDVIFCRNVMIYFDKPTQSKILSRFVPLMKPHALLF 255
            +R+ + F+  N+ A  + ++ + +D +FCRNV+IYFD+  Q + +     L+ P   +F
Sbjct: 175 LVRQQVNFRHGNMFAGDFLLNEKPYDFVFCRNVLIYFDREMQQQAVEVLDRLLHPQGTIF 234

Query: 256 AGHSE 260
            G +E
Sbjct: 235 VGPAE 239


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 657,959
Number of extensions: 25520
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 208
Effective length of database: 917,867
Effective search space: 190916336
Effective search space used: 190916336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)