BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1879.p (565 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980085|ref|YP_001353185.1| methyl-accepting chemotaxis pro... 715 0.0 gi|152981516|ref|YP_001354643.1| PilJ twitching motility protein... 100 2e-22 gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis pro... 93 5e-20 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 92 8e-20 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 91 2e-19 >gi|152980085|ref|YP_001353185.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 560 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/492 (72%), Positives = 411/492 (83%), Gaps = 5/492 (1%) Query: 77 LVDKISGEIDHIMIGAAETSFFVDTIKTKIGKDVVAAERIATSAEQNAATTEQIAANAER 136 V+KI GEIDHIMIGAAETS+FVD+IK KI +DV AA I T +EQNA+TTEQIAANAER Sbjct: 69 FVNKIGGEIDHIMIGAAETSYFVDSIKNKIAQDVQAANGIVTGSEQNASTTEQIAANAER 128 Query: 137 ASSIAAEVRSESVSGRAEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISEI 196 ASSIAAEVR+ESV+GR EV+ GL+QIG+AR DA +AS MM LQEKSRRIHGITEVISEI Sbjct: 129 ASSIAAEVRAESVAGRNEVNLGLEQIGKARDDAQTASEMMRVLQEKSRRIHGITEVISEI 188 Query: 197 AARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATDDIGVMVRAISEEAERA 256 AARTNLLALNAAIEAARAGE GRGFAVVAGEVRQLAQRTKEATDDIG MV AI+ EAERA Sbjct: 189 AARTNLLALNAAIEAARAGEHGRGFAVVAGEVRQLAQRTKEATDDIGAMVTAINVEAERA 248 Query: 257 ASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIALASREHVQTTQEIAEAI 316 A GM++LSS+V+EA+QNVE+VH L++IER+A S+E+I++IA ASREHV+TT +IA AI Sbjct: 249 AGGMHALSSKVMEASQNVERVHEFLSNIERAAGTSEEEIQQIAHASREHVETTHKIAAAI 308 Query: 317 TDIRNGMLHTDAELPRVAASAMELSERAEVVFEAIIDGGAHSGHDEIRGAAVEAAQAVGK 376 IR+GML TD ELPRVAASAM LSERAE V++AI + GA + HDEIR A AA +GK Sbjct: 309 LKIRDGMLATDTELPRVAASAMALSERAETVYDAIAESGAATQHDEIRMVASTAALRIGK 368 Query: 377 LFEGAIRAGQITEAALFDRSYTPIPHTSPQKHSSQFDGFTDRVLPALQEGLLERMPQLAY 436 +FE AI G+I+ ALFDR+Y P+P+TSP KH++QFD FTDRVLP +QE +L+ MPQLAY Sbjct: 369 VFEEAIANGRISRDALFDRNYRPVPNTSPAKHTTQFDAFTDRVLPEIQEAILDTMPQLAY 428 Query: 437 AGAVDNNGYFPTHNKKFSQPLTGDYDVDLVNNRTKRIFSDRTGKRCGANTKPFLLQTYRR 496 AGAVD+NGYFPTHNKKFS+PLTGDYDVDLVNNRTKRIF+DRTGKRCG+NTK FLLQTY+R Sbjct: 429 AGAVDDNGYFPTHNKKFSKPLTGDYDVDLVNNRTKRIFTDRTGKRCGSNTKAFLLQTYKR 488 Query: 497 DTGEVMHDLSVPIYVNGKHWGGFRVGYRSSHVPAAAPVAAAAPAPT---PARTATRQPA- 552 DTGEVMHDLSVPIYVNGKHWGGFR+GYRSS AAP AP P P R A R A Sbjct: 489 DTGEVMHDLSVPIYVNGKHWGGFRIGYRSSSAEQAAPAPTHAPLPNIKPPLRVADRAAAK 548 Query: 553 -TPRAARPVRIS 563 T A P R+S Sbjct: 549 RTQIAHTPGRVS 560 >gi|152981516|ref|YP_001354643.1| PilJ twitching motility protein [Janthinobacterium sp. Marseille] Length = 760 Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 121/214 (56%), Gaps = 4/214 (1%) Query: 136 RASSIAAEVRSESVSGRAE----VDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITE 191 ++++ +AEV +SV+ E V+ ++ + + R S + +L E S+ I ITE Sbjct: 534 KSANESAEVARQSVTAAEEGSRAVENAIKGMNEIREQIQETSKRIKRLGESSQEIGEITE 593 Query: 192 VISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATDDIGVMVRAISE 251 +IS+I +TN+LALNAAI+AA AGE GRGF+VVA EV++LA+R+ EAT IG +VR I Sbjct: 594 LISDITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSGEATKQIGALVRTIQT 653 Query: 252 EAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIALASREHVQTTQE 311 + A + M + V+E A+ + L+ I R +++ E I+ I+ A+ + + Sbjct: 654 DTHDAVAAMEKSTQGVVEGAKLSDAAGAALSDIRRVSNRLAELIQGISSATEQQATSANG 713 Query: 312 IAEAITDIRNGMLHTDAELPRVAASAMELSERAE 345 +A+ I I T + A S ELS+ AE Sbjct: 714 VAQNIQGILTVTEQTQEGTQQTAHSIRELSKLAE 747 >gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 116/206 (56%), Gaps = 28/206 (13%) Query: 114 ERIATSAEQNAATTEQIAANAERASSIAAEVRSESVSGRAEVDRGLQQIGQARTDALSAS 173 E A+S E+ +T Q A NA +A+ +AA +V G V +Q +G Sbjct: 298 EETASSMEELTSTVRQNADNARQANQLAASASEVAVKGGVVVAEVVQTMGS--------- 348 Query: 174 SMMAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQ 233 +Q+ SR+I I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQ Sbjct: 349 -----IQDSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRNLAQ 403 Query: 234 RTKEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQE 293 R+ A +I V+ I + ++ +G S++V +A + ++++ ++S+ R + Sbjct: 404 RSAAAAKEIKVL---IGDSVDKVEAG----SNQVTQAGKTMDEI---VSSVRRVT----D 449 Query: 294 QIEEIALASREHVQTTQEIAEAITDI 319 + EI AS+E ++I +AIT + Sbjct: 450 IMAEITAASQEQTSGIEQINQAITQM 475 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 14/198 (7%) Query: 114 ERIATSAEQNAATTEQIAANAERASSIAAEVRSESVSGRAEVDRGLQQIGQARTDALSAS 173 E A+S E+ +T +Q A NA +++ +A +V G A V + ++ +G Sbjct: 297 EETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGS--------- 347 Query: 174 SMMAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQ 233 + + + +I I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQ Sbjct: 348 -----INDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQ 402 Query: 234 RTKEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQE 293 R+ A +I ++ E+ + ++ + + E ++V +V ++ I ++ + + Sbjct: 403 RSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTD 462 Query: 294 QIEEIALASREHVQTTQE 311 IE+I A + Q TQ+ Sbjct: 463 GIEQINQAVMQMDQVTQQ 480 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 104/195 (53%), Gaps = 14/195 (7%) Query: 117 ATSAEQNAATTEQIAANAERASSIAAEVRSESVSGRAEVDRGLQQIGQARTDALSASSMM 176 A S Q +T Q A NA +A+S+A +V G + V + M Sbjct: 302 AASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVV--------------DTM 347 Query: 177 AQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTK 236 A + E +R+I I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQR+ Sbjct: 348 ASINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 407 Query: 237 EATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIE 296 A +I +++ + E + +N S + E +V++V ++ I ++ + I+ Sbjct: 408 AAAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGID 467 Query: 297 EIALASREHVQTTQE 311 ++ A + Q TQ+ Sbjct: 468 QVNQAIGQMDQVTQQ 482 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 936,756 Number of extensions: 35183 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 21 Length of query: 565 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 477 Effective length of database: 895,685 Effective search space: 427241745 Effective search space used: 427241745 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)