BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1878.p
         (91 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981955|ref|YP_001353515.1| hypothetical protein mma_1825 [...    83   3e-18

>gi|152981955|ref|YP_001353515.1| hypothetical protein mma_1825
          [Janthinobacterium sp. Marseille]
          Length = 90

 Score = 83.2 bits (204), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 1  MAHLTQDTDALLKRVRRIGGQVQALERALEGQADCGKTLHLAAAIRGAVHGLMEELIEAH 60
          M+H T+    LL RVRR+ GQV+ALE+AL+G +DC   L   AAIRGA +GLM E++E+H
Sbjct: 1  MSH-TKGDRKLLARVRRMKGQVEALEKALDGDSDCAAVLQQIAAIRGAANGLMAEVLESH 59

Query: 61 AREHVARPGLTDEQRRQGLEEVLEAIHRYTK 91
           REH+    +++E+R+  LE+V+  +  Y K
Sbjct: 60 IREHLGAQPVSEEERQADLEQVVTVLRSYLK 90


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 211,822
Number of extensions: 7536
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 91
Length of database: 1,221,021
Length adjustment: 61
Effective length of query: 30
Effective length of database: 995,504
Effective search space: 29865120
Effective search space used: 29865120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 122 (51.6 bits)