BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1872.p
         (286 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982475|ref|YP_001355165.1| hypothetical protein mma_3475 [...   142   2e-35

>gi|152982475|ref|YP_001355165.1| hypothetical protein mma_3475
           [Janthinobacterium sp. Marseille]
          Length = 274

 Score =  142 bits (358), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/284 (40%), Positives = 152/284 (53%), Gaps = 32/284 (11%)

Query: 12  VISRSRRRTALGIVSSVLVHAAVFLFVRAKLNEAPPRLDSPGR-PDAPLQVSLIRPPAPA 70
           +++  R RTA+GI  S+L+HA +  F    L++A  R+   G  P APL+VSLI      
Sbjct: 6   ILTNMRARTAIGIGLSLLIHALILFFA---LDQAKVRVAESGESPTAPLEVSLITQAPAP 62

Query: 71  PVAQPEPPKPAPEPKKVEPPRKKTVAKPLARHSAPTRQAVPQRQ-----PLPVAPTPSSN 125
             A      PAPE KKVE    K+   P  + SA  ++  P RQ     P PVAP  +S 
Sbjct: 63  KPAPKAATPPAPEQKKVE----KSNPAPRQQKSASQKKTEPIRQADKGTPPPVAPKTTSK 118

Query: 126 PPTTAAAPAD--DFMTFTNRNRQKREEAEQAAAQENAAARAAENPSANDIARANIA-FQD 182
                A P D  D +      R+     E         AR  E+ +A  IARANIA    
Sbjct: 119 ----EALPPDMSDMLAAARERRRAAGIIE-------PDARPVEDDNA--IARANIAEMVQ 165

Query: 183 RRGRGTN---GVFQIISMGPRVAQYSFRGWTTDQRRSQNQLIEVDAGFGGNVQLAVVNSM 239
           R+ RG N   GVFQI   G R A++ FRGW   ++ +  QLI+VDAG GG++  A+V  M
Sbjct: 166 RQSRGRNESGGVFQITFKGVRTAEFLFRGWDLRRKTNSRQLIQVDAGPGGDIDTAIVRRM 225

Query: 240 IALIRRYYQGDFNFDSQRLGRVVTLSARLEDTKGLQNFLLNEFF 283
           I LIR Y + DFN++S RLGRVV LSAR+ D+  L+ FL  +FF
Sbjct: 226 IDLIRLYEKEDFNWNSPRLGRVVVLSARMRDSAELEEFLKRDFF 269


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 452,711
Number of extensions: 13969
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 204
Effective length of database: 917,867
Effective search space: 187244868
Effective search space used: 187244868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)