BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1868.p
         (426 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980338|ref|YP_001354267.1| 3-deoxy-manno-octulosonate cyti...   162   3e-41
gi|152981078|ref|YP_001355038.1| hypothetical protein mma_3348 [...   118   6e-28

>gi|152980338|ref|YP_001354267.1| 3-deoxy-manno-octulosonate
           cytidylyltransferase (CMP-KDO synthetase)
           [Janthinobacterium sp. Marseille]
          Length = 250

 Score =  162 bits (410), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 141/252 (55%), Gaps = 16/252 (6%)

Query: 1   MHCIAVIPARFGSSRLPGKPLADILGKPMIQHVYERVRSLDELADVVVATDDERIVAAVN 60
           M    +IPAR  S+RLP KPLAD+ GKPMI  V ER       A V+VATD   I AA  
Sbjct: 1   MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAMQ-SGAAQVIVATDHADIFAACV 59

Query: 61  AFGGKALLTSPHHPSGTDRLREV--MQHHPAD-LYLNVQGDEPLVNPTHLRSLLQAMLAA 117
                  +T   HPSGTDR+ EV  +   P + + +NVQGDEPL++P+ + +   A L +
Sbjct: 60  QHKVAVQMTRADHPSGTDRIAEVAALIGLPDEAVVVNVQGDEPLIDPSLIAA--TATLIS 117

Query: 118 PQVQAGTLCHAITA-GEAENPNTVKVVRNRAGDALYFSRARIPFERESSGKAR------- 169
             V   T  HAI+   E  NPN VKVV +++G ALYFSRA IP+ R+    ++       
Sbjct: 118 RDVPMATAAHAISEIEEVFNPNVVKVVLDKSGRALYFSRATIPWHRDGFAVSKDAIPAGY 177

Query: 170 -YFKHIGVYAYRAELLAAFPGLPPSELEGAEMLEQLRIMDAGWQIRVIEVDHA-APGVDT 227
              +HIG+YAYR   L  +P L  S LE  E LEQLR++  G  I V    HA   GVDT
Sbjct: 178 APLRHIGLYAYRNAFLQEYPQLSVSPLEQLEALEQLRVLWHGVPIAVHVTPHAPVTGVDT 237

Query: 228 PACLERVRALMS 239
           P  L+RVR   +
Sbjct: 238 PEDLQRVRQFFA 249


>gi|152981078|ref|YP_001355038.1| hypothetical protein mma_3348
           [Janthinobacterium sp. Marseille]
          Length = 179

 Score =  118 bits (296), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 242 PDPALKTGSLADVKLVITDIDGVLTDGGIWYDDSGECLKRFHVRDGMGIKMLQEAGVNVA 301
           P+  + +   A V+L+I D+DGVLTDG + +   GE  K F+V DG GIK+LQ++GV+ A
Sbjct: 4   PNDPVASQRAAKVRLMIFDVDGVLTDGSLHFGPEGEVSKTFNVLDGHGIKLLQQSGVSTA 63

Query: 302 VISGRDSATLRRRLADLGI-TVFQLGAKDKAGACRAIMEQFQVGPEATAMIGDDSIDLPG 360
           +IS R S  + RR +DLGI  VFQ G  DK  A   ++ Q     +A   IGDD IDLP 
Sbjct: 64  IISARQSPIVLRRASDLGIHHVFQ-GIHDKRSAFEQLLTQTNTTADACGFIGDDVIDLPI 122

Query: 361 FAACAWPVAVDDAPDYVKRHARVVLTKAGGQGAFREFSDSVLNAQ 405
                +  +V +A   V+     V   +GG+GA RE  D +L AQ
Sbjct: 123 LLRVGFAASVPNAHAEVRSRVHYVTQASGGRGAARELCDFILRAQ 167


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,047,683
Number of extensions: 46601
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 340
Effective length of database: 903,079
Effective search space: 307046860
Effective search space used: 307046860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)