BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1866.p
         (279 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980539|ref|YP_001352222.1| 2-dehydro-3-deoxyphosphooctonat...   417   e-118

>gi|152980539|ref|YP_001352222.1| 2-dehydro-3-deoxyphosphooctonate
           aldolase [Janthinobacterium sp. Marseille]
          Length = 281

 Score =  417 bits (1073), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/278 (74%), Positives = 232/278 (83%), Gaps = 1/278 (0%)

Query: 1   MIKIN-DIEVGNELPFVLFGGINVLESEQFAVDVCGEYVRITKELGIPYVFKASFDKANR 59
           MI IN +I+V N  PFVLFGGINVLES   A+  C EYVR+T +LGIPYVFKASFDKANR
Sbjct: 1   MININGEIKVDNAAPFVLFGGINVLESRDLAMRSCEEYVRVTGKLGIPYVFKASFDKANR 60

Query: 60  SSIKSYRGPGLEAGLKIFEAVKKAHGVPVLTDVHEPYQAAEVASVCDVLQLPAFLARQTD 119
           SSI SYRGPGLE GL+IFE VKK  GVP++TDVHEPYQA   A V DVLQLPAFLARQTD
Sbjct: 61  SSIHSYRGPGLEEGLRIFEDVKKTFGVPLITDVHEPYQAKIAAEVIDVLQLPAFLARQTD 120

Query: 120 LVIALAKTGKVINIKKPQFVSPPQMKNIVEKFEEGGNTNVMLCDRGAQFGYDNLVVDMLG 179
           LV+ALA+TG+VINIKKPQF+SPPQM NIVEKF E GN  ++LCDRG  FGYDNLVVDMLG
Sbjct: 121 LVVALAQTGRVINIKKPQFLSPPQMLNIVEKFREAGNDKLILCDRGTCFGYDNLVVDMLG 180

Query: 180 FGVMKQVSGNKPVIFDVTHALQQRESGAAASGGRRGQVTELARAGMALGLAGLFLEAHPD 239
           FGVMK+V+GN P+IFDVTHALQQR+S   ASGGRR QV +LARAGM +GLAGLFLEAHPD
Sbjct: 181 FGVMKKVTGNLPIIFDVTHALQQRDSLGTASGGRREQVADLARAGMGVGLAGLFLEAHPD 240

Query: 240 PSKALCDGPSALRLSQLKPFLEQVKAVDELVKNLPELD 277
           P  A CDGPSAL L +L+PFL Q+K +D+LVK+   LD
Sbjct: 241 PKVAKCDGPSALPLDKLEPFLAQLKQLDDLVKSFAPLD 278


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 552,040
Number of extensions: 19729
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 197
Effective length of database: 917,867
Effective search space: 180819799
Effective search space used: 180819799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)