BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1865.p
         (477 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981930|ref|YP_001352338.1| hypothetical protein mma_0648 [...    84   1e-17

>gi|152981930|ref|YP_001352338.1| hypothetical protein mma_0648
           [Janthinobacterium sp. Marseille]
          Length = 480

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 196/446 (43%), Gaps = 17/446 (3%)

Query: 27  VLTRLIAPSEYGLMAMAGVATNLAFVLRDMGTAAAIIQKAEISQADTSSVFWLNMAGGTL 86
           ++TR++ P+++G +A A     L  ++  +G   A+IQ+  I      S FW+ +A G  
Sbjct: 25  IMTRVLTPTDFGSVAFAQSIVLLTQLVIGLGINEALIQRRPIDMLHLDSAFWMAIALGLS 84

Query: 87  LMVLLFGTAPLLSATFHEPRLTEVLWILSLSFPIAASSTVHQALLERVSRFRLVAGIEST 146
             +   G          +  +  +L     +      + +  A+L+R  R + +A     
Sbjct: 85  GFLFCVGVGLYFIFYLEQNLVGTILLAEGTACLFTGLNLLPSAMLDRKLRTKAIARRTVA 144

Query: 147 SSLLALLIALLLAYRGLGVWSLIAQALLMAACTTLLMWWFSPFRPKAIFDREALRG--VF 204
             L   ++A+ LA    GVWS++   ++     T++ W      P+  F     +   VF
Sbjct: 145 GKLSYCIVAIGLALAQFGVWSIVIAGIVQNILLTVIFWRGHTRMPQRRFSWAHAKQLIVF 204

Query: 205 KFSGSMAGHQLASYLFRNADSFIVGKMLGVTVLGNYSLAYKLMLFPVQNISWVAVRSLFP 264
            F   + G  L ++L R   S ++G + G+++LG  S+A+K        +  VA R   P
Sbjct: 205 GFPVMLEG-ALWAFLTR-VFSLLIGAIHGMSMLGFVSVAFKATDALSNIVGSVAGRIGLP 262

Query: 265 VMSRRQDDKPYMAALTLRSLKLVSFISAPLMFGVAGVSDLFVDAFLGPKWGLVGGILTFL 324
           + S  Q DK  +    L++ ++++F+S P+  G+A  +  +V   LG KW     ++  L
Sbjct: 263 LFSSMQADKERLQRSFLQTTQVMAFVSTPIFVGLALTTAQWVPLLLGDKWSEAIPMIVIL 322

Query: 325 AMVGYVQVISSIASPVLMALGKSDWLFRMSMVGTPLHIAAYIIGALLDGARGLSIAYLVA 384
             V  +       SP L ALG    L   ++  +   IAA  + A        S  Y++A
Sbjct: 323 CFVWAISFTRVFVSPYLRALGHPRALLLPAVCASACTIAAVFLTA------HQSAIYIIA 376

Query: 385 A----ILMAIP-GFYLSGKVLSIKLSDVIVSLLPSALSGLAMAVLLHYARHYLPHYSGHL 439
           A    + +  P G +L  K  +I +   +  LL   L    MA  ++ A+  L H +  L
Sbjct: 377 AWSCRVAVTYPLGLHLLRKYAAIPIRQQMQPLLSPFLCVTFMAACVYAAQRGLQHLALPL 436

Query: 440 LFAMLVGM--GILFWAITVVLFQRRE 463
           L  +L+ M  G + +A+ V+L  R  
Sbjct: 437 LAMLLISMAVGAVSYALAVLLLHREH 462


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,003,111
Number of extensions: 39347
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 390
Effective length of database: 899,382
Effective search space: 350758980
Effective search space used: 350758980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)