BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1862.p
         (475 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981626|ref|YP_001352336.1| mannose-6-phosphate isomerase /...   631   0.0  

>gi|152981626|ref|YP_001352336.1| mannose-6-phosphate isomerase /
           mannose-1-phosphate guanylyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 470

 Score =  631 bits (1628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/470 (65%), Positives = 376/470 (80%)

Query: 6   IYPVILSGGSGTRLWPLSRAAYPKQFLPLVSEQTMLQETVARVGSWPEVQAPLIVCGNEH 65
           +YPVILSGGSG+RLWPLSRAA PKQ LPLVSE+TMLQ+TV R+  W  +  PL+VCG++H
Sbjct: 1   MYPVILSGGSGSRLWPLSRAALPKQLLPLVSERTMLQDTVLRISGWKGMAPPLVVCGDDH 60

Query: 66  RFMIAEQLREIGVRPLGIMLEPQGRNTAPAVAAAALHLQRLDPEALMLVLPADHVITDVL 125
           RF++AEQLR+IG+ P  I+LE QGRNTAPAVAAAA +L  +DP+A+MLVLPADHVI D  
Sbjct: 61  RFLVAEQLRQIGITPTAILLEAQGRNTAPAVAAAANYLAAIDPDAVMLVLPADHVIVDDD 120

Query: 126 AFHEAVRRALVSVQQGALATFGIEPTQPETGYGYILRGAAHGTDSGNFLVERFVEKPDLA 185
           AFH AV  A  ++   ALATFGI PT  ETGYGYI RGAA  T +  F VERFVEKPD A
Sbjct: 121 AFHVAVMLAADAIGSTALATFGIVPTAAETGYGYIRRGAALDTSNTCFAVERFVEKPDRA 180

Query: 186 TATGFLQQGGYYWNSGMFLFKARDYLAELEVHRPLIGAAVKEAVAKAYNDLDFCRLDETS 245
           TA  F+    Y WNSGMF+F+A  YLAEL+  +P +      AV  AY+DL FCRLDET+
Sbjct: 181 TAEKFIADKNYSWNSGMFMFRASAYLAELQRLQPEMAQCCALAVHDAYSDLSFCRLDETA 240

Query: 246 FVASPSESIDYAVMENTARAVVVPASIGWSDVGSWSALHEVLPADAEGNVVRGDVHLNQV 305
           + A P+ESID+AVME+T  A+V+P  IGWSDVGSWSAL E+ P D +GN++ GDV+ + V
Sbjct: 241 YAACPAESIDFAVMEHTPHALVIPVDIGWSDVGSWSALAEIKPGDKDGNILHGDVYADGV 300

Query: 306 KNTLVRAESRMVAVLGVEDLVVVETDDVVLVAHRDKVQEVKAFVDKLKNTQRTEHVHHKR 365
            +TL+R+ESR VA +GV++L+VVET D VL+  +D+VQ VK  V+ LK  QR+EH++H R
Sbjct: 301 TDTLIRSESRFVAAIGVDNLIVVETRDAVLIVAKDQVQRVKQVVEHLKLEQRSEHLNHTR 360

Query: 366 VFRPWGSYESVDAGERFQVKRIIVKPGEKLSLQMHYHRAEHWVVVSGSALVTRGEEVTLL 425
           V+RPWG YE +DAGERFQVKRI V PGEKLSLQMH+HRAEHWVVV+G+A +T GE V LL
Sbjct: 361 VYRPWGCYEGIDAGERFQVKRITVDPGEKLSLQMHHHRAEHWVVVTGTARITCGENVRLL 420

Query: 426 SENESIYLPIGVTHRLENPGKLPLHLIEVQSGSYLGEDDIVRFEDVYKRA 475
           +ENESIY+PIG+THRLENPGK+PLHLIEVQSG+YLGEDDIVRF+DVY+RA
Sbjct: 421 TENESIYIPIGMTHRLENPGKMPLHLIEVQSGAYLGEDDIVRFDDVYQRA 470


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,054,891
Number of extensions: 42578
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 388
Effective length of database: 899,382
Effective search space: 348960216
Effective search space used: 348960216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)