BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1861.p
         (381 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979925|ref|YP_001352335.1| mannose-1-phosphate guanylyltra...   581   e-167
gi|152982188|ref|YP_001352105.1| nucleotidyl transferase [Janthi...    92   6e-20
gi|152980566|ref|YP_001353942.1| dTDP-glucose pyrophosphorylase ...    58   1e-09

>gi|152979925|ref|YP_001352335.1| mannose-1-phosphate
           guanylyltransferase [Janthinobacterium sp. Marseille]
          Length = 385

 Score =  581 bits (1498), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 274/373 (73%), Positives = 320/373 (85%)

Query: 1   MKAMILAAGKGTRVRPLTYALPKPMIPILGKPVMEYLIEHLVKFGIQDIMVNVSYLHDRI 60
           MKAMILAAGKGTRV+PLTY LPKPMIPILGKPVMEYL+EHLVK+GI +IMVNVSYLH +I
Sbjct: 1   MKAMILAAGKGTRVQPLTYELPKPMIPILGKPVMEYLVEHLVKYGIHEIMVNVSYLHQKI 60

Query: 61  ENYFGEGQRFGARIGYSFEGYVDDDGQVFPNPIGSAGGMKKIQEFGGFFDETTLVICGDA 120
           E+YFGEGQRFGA+IGYSFEGY+ D+G+V P PIGSAGG+KKIQEFGGFFDETTLVICGDA
Sbjct: 61  EDYFGEGQRFGAQIGYSFEGYMTDEGEVMPKPIGSAGGLKKIQEFGGFFDETTLVICGDA 120

Query: 121 LIDLDLHSALFEHRRKGALVSVITKEVPMEQVSSYGIVVAEPDGKVKSFQEKPKQEEALS 180
           LIDLD+ SALFEHRRKGA+VS+ITKEVP+E+ S YG+VV + +G+V SFQEKPK E+ALS
Sbjct: 121 LIDLDIKSALFEHRRKGAMVSIITKEVPLEKASDYGMVVTDEEGRVLSFQEKPKPEDALS 180

Query: 181 NLASTGIYIMEPAALELIPKDKFFDIGADLFPLLVEKQLPFYAQKRFFNWIDIGNVTDFW 240
           NLASTGIYI EP  L+LIP D  FDIG+ LFPLLVEK +PF+AQKRFFNWIDIGNV D+W
Sbjct: 181 NLASTGIYIFEPEVLDLIPSDVEFDIGSQLFPLLVEKGVPFFAQKRFFNWIDIGNVKDYW 240

Query: 241 SVLQSVLKGEVAQMYVPGTQVQEGVWVGLNTRIEWEGTTIEGPVYIGAGSHVEAGSTIIG 300
            V Q+VLKGE+A M +PGTQ+ +GVWVGLNT I+WEGTTIEGPVYIG+G+ +EAGS IIG
Sbjct: 241 QVSQNVLKGELAHMTMPGTQIADGVWVGLNTHIDWEGTTIEGPVYIGSGTTIEAGSKIIG 300

Query: 301 PAWIGHGSHICSGAKVIRSVLFEYTRVASGTVFENSVVYGAYSVTHDGAMKHTSDQPDEQ 360
           P WIGHGS ICSG++V RSVLFEYTRV+  +     VV   Y V+ +G M+H S+  ++ 
Sbjct: 301 PTWIGHGSQICSGSEVTRSVLFEYTRVSPHSSMSELVVCKDYCVSREGKMQHVSECVEDY 360

Query: 361 WNDARDRRLKPRS 373
           W DARDRR K R+
Sbjct: 361 WRDARDRRGKTRA 373


>gi|152982188|ref|YP_001352105.1| nucleotidyl transferase
           [Janthinobacterium sp. Marseille]
          Length = 238

 Score = 91.7 bits (226), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 12/119 (10%)

Query: 1   MKAMILAAGKGTRVRPLTYALPKPMIPILGKPVMEYLIEHLVKFGIQDIMVNVSYLHDRI 60
           MKAMI AAG+G R+RPLT   PKP++ + G+P++ + I +LV+ GI DI++N ++L + I
Sbjct: 1   MKAMIFAAGRGERMRPLTDTCPKPLLTVRGRPLIVWHILNLVRAGITDIVINHAHLGNLI 60

Query: 61  ENYFGEGQRFGARIGYSFEGYVDDDGQVFPNPIGSAGGMKKIQEFGGFFDETTLVICGD 119
           E   G+G +FGARI YS EG            + +AGG+ K +   G  DE  L +  D
Sbjct: 61  EETLGDGTQFGARISYSAEG----------TALETAGGVAKARHLLG--DEPFLALAAD 107


>gi|152980566|ref|YP_001353942.1| dTDP-glucose pyrophosphorylase
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 37/218 (16%)

Query: 2   KAMILAAGKGTRVRPLTYALPKPMIPILGKPVMEYLIEHLVKFGIQDIMVNVSYLHD--R 59
           K +ILA G G R+ P T A+ K ++P+  KP++ Y +  L+  GI+DI++ +S   D  R
Sbjct: 11  KGIILAGGSGARLYPATVAISKQLLPVYDKPMIYYPLTTLMLAGIRDILL-ISTPQDTPR 69

Query: 60  IENYFGEGQRFGARIGYSFEGYVDDDGQVFPNPIGSAGGMKKIQEFGGFFDETTLVICGD 119
            +    +G ++G  + Y+ +          P P G A      + F G  ++ + +I GD
Sbjct: 70  FQQLLKDGSQWGINLSYAVQ----------PAPEGLAQAFIIGRHFIG--NDPSALILGD 117

Query: 120 AL-----IDLDLHSALFEHRRKGALVSVITKEVPMEQVSSYGIVVAEPDGKVKSFQEKPK 174
            L      D  L  A    R  G+ V     + P      YG+V  +   +  S +EKP 
Sbjct: 118 NLYYGHAFDQQLMQA--SARIHGSTVFAYHVQDP----ERYGVVEFDDKHQAVSIEEKPL 171

Query: 175 QEEALSNLASTGIYIMEPAALELIPKDKFFDIGADLFP 212
             +  SN A TG+Y  +         ++  DI A + P
Sbjct: 172 VPK--SNYAVTGLYFYD---------NQVCDIAASIQP 198


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 961,039
Number of extensions: 42925
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 3
Length of query: 381
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 296
Effective length of database: 906,776
Effective search space: 268405696
Effective search space used: 268405696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)