BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1860.p
         (357 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981529|ref|YP_001352333.1| teichoic acid biosynthesis prot...   363   e-101

>gi|152981529|ref|YP_001352333.1| teichoic acid biosynthesis protein
           [Janthinobacterium sp. Marseille]
          Length = 396

 Score =  363 bits (931), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/353 (54%), Positives = 239/353 (67%), Gaps = 2/353 (0%)

Query: 1   LPFDRVSLQDAVRITGTAVERRQRCFLSTPNLNFAIACLEDPQFRLSVIQSDLSIADGMP 60
           LPFD +S + AV     A    QRCFLSTPNLNFA+A L    FR SVI+SDLS+ADGMP
Sbjct: 35  LPFDVISTEQAVDKLSHAARHYQRCFLSTPNLNFAVASLAGGDFRDSVIRSDLSVADGMP 94

Query: 61  LIWIARAIGLPINERVAGSSLFQALRLATLPAGAKPMRVYFFGGPPGVAQAASEKLNASA 120
           L+WIAR +GLP+ ERVAGS+LF+ LR  T     + +RVYFFGGP GVA+AA+EKLNA A
Sbjct: 95  LVWIARLLGLPVTERVAGSTLFERLR--TRGNTGERLRVYFFGGPDGVAEAAAEKLNAGA 152

Query: 121 SGMTAVGFDSPGFGSIEQMSDAASIERINASGADFLVVALGAKKGQAWIQHNLSRLRVPL 180
           +G+   G +SPGFGS+EQMS +A I RINAS ADF+VVALGAKKGQAWI+HNL+ L  P+
Sbjct: 153 AGLVCTGHESPGFGSVEQMSTSAIINRINASQADFVVVALGAKKGQAWIEHNLAALDAPV 212

Query: 181 ISHLGAVVNFVAGTVSRAPTWAQKSGLEWLWRIKEEPKLWRRYWDDGIGLLSLLLQRVIP 240
           ISHLGAVVNFVAGTV RAP W Q+ G EWLWRI EEP LWRRY  DG+ LL L+ ++VIP
Sbjct: 213 ISHLGAVVNFVAGTVVRAPRWIQRIGGEWLWRIWEEPNLWRRYLHDGMTLLKLMSRQVIP 272

Query: 241 LALAARRSAPGPAQFDGALLQLQEEDGNCILKLSGALGQPNIQRLRTLLPAAASAAHPLV 300
            AL  RR     A    A + + ++   C +   GA  + N+Q +R     A +    + 
Sbjct: 273 CALFLRRRKCDAAALAAAHISVSKQPSLCTITAGGAWEESNLQPMRKAFSDATAMPGDIR 332

Query: 301 LDCTGLEYLDSAALASLMLLYGACHASGRSWTMRGVSQSLRHQLESHCAQYLL 353
           +D +G+ ++DSA +A LMLLYG      R + + GV   +   L   CA YL+
Sbjct: 333 IDFSGVTHIDSACIALLMLLYGHQTKVQRDFFLYGVHADVLRTLNLFCADYLV 385


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 804,735
Number of extensions: 32771
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 273
Effective length of database: 910,473
Effective search space: 248559129
Effective search space used: 248559129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)