BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1858.p
         (467 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982357|ref|YP_001352329.1| hypothetical protein mma_0639 [...   510   e-146

>gi|152982357|ref|YP_001352329.1| hypothetical protein mma_0639
           [Janthinobacterium sp. Marseille]
          Length = 471

 Score =  510 bits (1313), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/467 (55%), Positives = 319/467 (68%), Gaps = 2/467 (0%)

Query: 3   RPRTTLRRLHLALGLTALISTAPVWAQE--WGTYLKPFAADSLWNSRPVNPVFDTFVIPT 60
           R  T L       G   + STA   A +  WG+Y KPFAA+S WNSRP+ PVF  FVIP 
Sbjct: 5   RSNTGLASALALCGALLMASTATHAADKAGWGSYRKPFAANSPWNSRPLQPVFGDFVIPK 64

Query: 61  DAYFPTVTTNTYSTGIFLASPNDPPVTVTGLTGSKGLFHTDDENYHDITIPHWPAAARAA 120
            +Y P V    +STG+FLA+  D PVTV GL  ++GL+  D   +HD+TIP WP+   AA
Sbjct: 65  SSYSPGVAGGEWSTGVFLANAGDQPVTVGGLPKTQGLWDPDASAFHDVTIPRWPSDVVAA 124

Query: 121 PGTDGHADIVDPTTGIVHSFFKLKQEGTQWTAAMYAWTKIDGRGWPDPGHYYQGARATGV 180
             +DGHADIVDP TGIVHSF++LK+   +W AA YAWTK++GRGW DP HY+QGARA GV
Sbjct: 125 SASDGHADIVDPVTGIVHSFWQLKKLDGKWVAAQYAWTKLNGRGWGDPAHYFQGARAAGV 184

Query: 181 PAAAGIIRIHEAAQKPQYYPHALAMSLTYSGLSPKPAYVFPATSADTEAATRNKGGIPEG 240
             A G+IR HE       Y HALAMSLT+ GLS +P YVFPATSADT+AATRN G IPEG
Sbjct: 185 ATAGGLIRKHEVNDGDVMYRHALAMSLTFDGLSSQPTYVFPATSADTDAATRNTGKIPEG 244

Query: 241 SLVMLPPDFDTSKLTNAEVRRIAETLKRYGAYIVDANIGTPFVIYAEIGSDANPSPSGWN 300
           +L+MLPP +DTSK+ + E+R++AETLK YGAY+VD N GTPF IY E G+  +    GWN
Sbjct: 245 ALLMLPPSYDTSKIASPELRKVAETLKTYGAYVVDRNFGTPFFIYVENGAGFDLHKGGWN 304

Query: 301 NTVASEMQSIRAALRRVVSAQSWIDGNGKTFTPNQNLNLLSMRGNWTQQSGSTLGKYSSW 360
           N VA++++ +R ALR VVSAQ W+DGNGK  T  + +NLLSMRG W  QSG TLG +  W
Sbjct: 305 NEVANDLERMRVALRPVVSAQGWLDGNGKPVTLQKKMNLLSMRGPWQLQSGGTLGNFDIW 364

Query: 361 DQAVVFPATSSMSEVVNYSNRGMNAVTWANPVMGASYKLTARTTNGGKLRMSVYDQLVGK 420
            QAVVFPA       VNYS+RG++ V+WA P  G +Y++TARTT G KLR+ V D     
Sbjct: 365 KQAVVFPAGEQAVTQVNYSSRGLHPVSWALPQAGKNYRVTARTTGGAKLRLQVRDPSGNP 424

Query: 421 VVFDSGYLADGESKTFTWNANSPRLVLYAQSGVGNSSAVGGQLLKAD 467
           + FDSG L  GESKTF W      + +YA SGVG  S V G+LL+ D
Sbjct: 425 LYFDSGELQQGESKTFAWPDPRAIVTVYATSGVGTVSTVSGELLEQD 471


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,192,156
Number of extensions: 53614
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 380
Effective length of database: 899,382
Effective search space: 341765160
Effective search space used: 341765160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)