BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1856.p
         (352 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983082|ref|YP_001353397.1| hypothetical protein mma_1707 [...    60   2e-10

>gi|152983082|ref|YP_001353397.1| hypothetical protein mma_1707
           [Janthinobacterium sp. Marseille]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 5/86 (5%)

Query: 5   HTKHQDIASLDGWRAVAILIVATSHAGLGKWVPGG-LGVTIFFFLSGYLITTLLLREFAA 63
           H K++    +DG RAVAIL V   HA   ++V GG +GV IFF +SG+LI++++++E   
Sbjct: 55  HIKYR--PDIDGLRAVAILPVVIFHA-FPQYVIGGFVGVDIFFVISGFLISSIIIKEI-N 110

Query: 64  TGTLNIKHFYLRRLLRLTPPLLLVLV 89
            G    + FY RR+ R+ P L+L+L 
Sbjct: 111 EGKFTFQQFYARRIKRIFPALILILT 136


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.333    0.145    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 725,521
Number of extensions: 26237
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 268
Effective length of database: 910,473
Effective search space: 244006764
Effective search space used: 244006764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 130 (54.7 bits)