BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1854.p
         (478 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982788|ref|YP_001352327.1| hypothetical protein mma_0637 [...   409   e-115

>gi|152982788|ref|YP_001352327.1| hypothetical protein mma_0637
           [Janthinobacterium sp. Marseille]
          Length = 471

 Score =  409 bits (1051), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/440 (51%), Positives = 302/440 (68%), Gaps = 3/440 (0%)

Query: 6   LPSS-QIVFVLIACVIAAMAGLVLPVLAGMLDGSLAKLAAVPVLLILGGLFLFNKRLLLL 64
           LP+  Q   VL   V+A +AG+++P  A ++D  LA+LAA+P  L+ G L +FN+ LLL 
Sbjct: 4   LPNQGQAHTVLAVIVLALLAGVLVPFYAEVMDYKLARLAALPAFLVFGMLLVFNRMLLLT 63

Query: 65  CVLLLRASGDIVLESTRVGSGGGFSLGLGGAINALIILIAFLFIVEKPQLLPRKAWVPWF 124
            +++ R+ GD+VLESTR  S GG++ GLGG IN  +IL+A + ++E+PQ LP+K  + W 
Sbjct: 64  LIIVFRSVGDVVLESTRF-SIGGYTTGLGGVINLCVILLACMLVMERPQQLPKKMTLAWL 122

Query: 125 ILLAIAVIGMVVSPDKGAALKIVLGLCSYFAVFVCAFYVVRTPEEFRSMILLILASSLIP 184
             L  A+ G+ +SP+KG A++  L L SYFA+FV AFY VR+ ++FR  + L+L SSL+P
Sbjct: 123 PFLLAALFGVAISPEKGDAIRTYLTLLSYFAMFVSAFYFVRSAQDFRYCVRLVLWSSLLP 182

Query: 185 TVYGFVSTALNARGGL-SGFRLQGTFGHPNIFAFYLTLVIVLGLYVIKSTQFKLDQFKRF 243
            +Y  V  AL   GG   GFRLQ TF HPNIFAFYLTLVI L L+ +K    +L    R 
Sbjct: 183 ALYALVDVALRGGGGGPEGFRLQSTFTHPNIFAFYLTLVIPLTLFTLKDKATQLSGGMRV 242

Query: 244 ALGGYLGLLFLLLLLTQTRSAWVACFLIFLLYGVKFERRYLAYMLILGTLALLVPSVQER 303
           AL  Y   L  LL+LTQTRSAW+AC  +F+ Y + FERRYL Y+++L  +ALLVP +++R
Sbjct: 243 ALTLYFFYLLALLVLTQTRSAWIACLFVFIGYALLFERRYLLYLMLLPVVALLVPEIRDR 302

Query: 304 ILQLDSGNTVTTYAKLNSFAWRTYLWHSGLNWMSPSHYLYGYGVEAFPFYSPIFFPLAGG 363
           +L L SG     YAKLNSFAWR  +W SGL WM PSHYLYGYGVEAF  +S  FFP A  
Sbjct: 303 LLDLGSGTEAVGYAKLNSFAWRLSIWESGLQWMRPSHYLYGYGVEAFRHFSQTFFPAANK 362

Query: 364 VNWGAHSVFVQWFFDTGLIGVVAYLAIFYQVMRVLIRYQKQDRLGGIILICTLIEYLVVS 423
           +NWGAH+V+VQWFFD G+IG+ AYL ++ +++  L    + D+L   I I  ++ YLVVS
Sbjct: 363 MNWGAHNVYVQWFFDAGVIGLCAYLFLYARMVLTLKSLLRVDKLAAFITISIVLVYLVVS 422

Query: 424 ASDNMLAYLAFNWYFWLVMG 443
           +SDNM  YL FNWYFW V+G
Sbjct: 423 SSDNMFGYLVFNWYFWFVIG 442


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.145    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 962,141
Number of extensions: 36517
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 391
Effective length of database: 899,382
Effective search space: 351658362
Effective search space used: 351658362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 131 (55.1 bits)