BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1852.p
         (292 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981683|ref|YP_001352324.1| mrp-like protein [Janthinobacte...   312   1e-86

>gi|152981683|ref|YP_001352324.1| mrp-like protein
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score =  312 bits (800), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 166/290 (57%), Positives = 214/290 (73%), Gaps = 2/290 (0%)

Query: 4   ATLTFTEGASLP-NRSIGAILVDSGKLSPENAERILRLQRERGLRFGDAAIQLGLLTQSD 62
           ATL + E   L  +  +G+ILV SG+LS  + ERIL+ Q     RFG+  + LGLLT +D
Sbjct: 12  ATLQYRETRPLAAHNQMGSILVKSGRLSVGDTERILQEQHIHRQRFGETGVALGLLTAAD 71

Query: 63  IDQALSRQFDYPYLLKGESKVSEKVVAAYNPFSKQVEALRALRSQLMVRWFDVDGKHKSL 122
           ID ALS QF YPYL  GES VS++V+AAY+PFSKQVEALRALRSQL++RWF    +  +L
Sbjct: 72  IDFALSSQFAYPYLRHGESGVSDEVIAAYDPFSKQVEALRALRSQLVMRWFGAGAQRSAL 131

Query: 123 SIVSPESGEGRSFIASNLAVVFSQLGERTLLIDADMRHPCQHELFGLDNRNGLSGVIAGR 182
           +I S E G+GRS+IA+NLAV+FSQLG+RTLLIDADMR P QH+LFG++NR+GLSG+++GR
Sbjct: 132 AITSAERGDGRSYIAANLAVLFSQLGQRTLLIDADMRRPRQHQLFGIENRSGLSGILSGR 191

Query: 183 CSVADALQRVPALLDLSVLPAGPTPPNPQELLGRPNFTQMLADLVQDFDVILVDTPSGAQ 242
               D +QR+ +L+DLSVLP+G  PPNPQELLGR  F QML D   +FDVIL+DTP    
Sbjct: 192 NGATD-VQRIESLMDLSVLPSGVLPPNPQELLGRGAFPQMLRDFSTEFDVILIDTPPDYD 250

Query: 243 YADGNMVSARTGASLVVVRTHVTHISAVRALTDKLTSAHVAVVGSVVNEF 292
           YADG   +AR GA+LVV R   +H+ A+  L D +  + V VVG+V+NE+
Sbjct: 251 YADGQTAAARAGAALVVARKDSSHVGAIGNLVDSMKQSGVLVVGAVLNEY 300


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 672,383
Number of extensions: 28114
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 210
Effective length of database: 917,867
Effective search space: 192752070
Effective search space used: 192752070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)