BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1851.p
         (464 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982045|ref|YP_001352323.1| exopolysaccharide biosynthesis ...   417   e-117

>gi|152982045|ref|YP_001352323.1| exopolysaccharide biosynthesis
           protein [Janthinobacterium sp. Marseille]
          Length = 464

 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/454 (50%), Positives = 314/454 (69%), Gaps = 1/454 (0%)

Query: 1   MNLSQFILILQAHRKIILLILSVTVIVALAVSLALPKQYRATSSVVLNYKASDPVTGLVV 60
           M +SQ +  L+A   IILL+L++T+  A  VSL + K Y+AT+++VLN K  DPVTGL V
Sbjct: 1   MTISQILRTLRARYHIILLLLALTLASAFVVSLVMSKTYKATTALVLNNKGVDPVTGLNV 60

Query: 61  SPQALPGFMPTQVAIINSPSVALAVVDSLKLADQQEVKDAYNADKHGDLDIRNWLAGLLL 120
             Q +PG+MPTQV I+NS  VA+ V+D LKLAD   VK+ +   + G   I++WLA  L 
Sbjct: 61  PAQLMPGYMPTQVDIVNSKIVAMKVIDDLKLADNPAVKERFARVEPGHGTIQDWLADGLR 120

Query: 121 KKLDAVASKESSVIDITFRAEDPQFAALVANAFAAAYQNVSMQLKLDPTRKASSYFNDQI 180
             L    ++ESSV++I+F+ +D  + A VANAFA AYQ VS+ LK+ P +KAS Y N+QI
Sbjct: 121 SNLTVEPARESSVLNISFKGDDADYVAKVANAFATAYQQVSVDLKVAPAQKASGYINEQI 180

Query: 181 KVLRDAYEQAQVKLSKYQEEHGITNIDNRTDVETNRLNDLSTQLVMAQAALSEAQSRRRQ 240
           KVLRD +E AQ ++S YQ+++ I + DN+ DVET RLN+LS+QLV+AQ    +A SR++Q
Sbjct: 181 KVLRDKFEDAQNRMSAYQQKNSIFSSDNKLDVETARLNELSSQLVVAQGQAMDASSRQQQ 240

Query: 241 AAGGGAVDSPDVNANALIQTLKSNLAASEARFEQASKRLGVNHPDYQAAKAERDGLQAQL 300
                 V SPDV +N LIQTLKS L+ +EA+F   SK+L +NHP Y AAK+E D L+A L
Sbjct: 241 VQRNAGV-SPDVLSNPLIQTLKSRLSEAEAKFADTSKKLNINHPQYIAAKSEVDQLRANL 299

Query: 301 AAATNAISASVGSNATILAKRESEIRAEFEAQKRKVLEMNRTRDELAVLSRELESAQRAY 360
                  S+ V +NA I  +RE+EIRA  +AQK+KVL +N  RDEL+VL+ E+E+A++AY
Sbjct: 300 NQQIGLASSGVVNNAKIAQQREAEIRAALDAQKKKVLALNGARDELSVLANEMENAKKAY 359

Query: 361 ELTSQRFAQTSLEGQSNQSDISLLSAAVPPPGPSSPRIVLNLILAVFVGSILGVMAALGL 420
           E  SQR  QTSLEGQS QSDIS+L+ A  P  P+SPR++LNL++A+ VG +LG+ AAL +
Sbjct: 360 ETASQRLTQTSLEGQSMQSDISVLTVATAPRSPASPRLMLNLLVALVVGLMLGIGAALAM 419

Query: 421 ELTNRRVRSEHDLVEELGLPVLGAITRPPAAARR 454
           EL + RVR+  DL     LP++G I +     +R
Sbjct: 420 ELLDHRVRAAEDLTRIFDLPLIGVIEKTKRLGKR 453


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.128    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 767,801
Number of extensions: 25492
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 377
Effective length of database: 899,382
Effective search space: 339067014
Effective search space used: 339067014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)