BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1850.p
         (263 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980657|ref|YP_001352322.1| polysaccharide export outer mem...   299   1e-82

>gi|152980657|ref|YP_001352322.1| polysaccharide export outer
           membrane protein [Janthinobacterium sp. Marseille]
          Length = 262

 Score =  299 bits (766), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/263 (56%), Positives = 199/263 (75%), Gaps = 1/263 (0%)

Query: 1   MRKVVFLLVGLMLASWSLFAQADDILLGAGDVIRVKVYGSDDLSLETRISEAGVISYPLV 60
           M+K+   ++ +++ +   +A A D+ LGAGDV+++ V+G++DL++ETR+SEAG IS+PLV
Sbjct: 1   MKKIRHAMLAILMVTVGSWATAADVPLGAGDVVKITVFGNNDLTVETRVSEAGSISFPLV 60

Query: 61  GEVKIGGLSTAQAESKIAGLLKKGGYLLNPQVNILVTVPQSQMVSVLGQVTKPGRYSLDG 120
           GEVK+GGLS+ QAE KIA LL KGG++ NPQVN++VT  QSQ VSVLGQV KPGRY +DG
Sbjct: 61  GEVKVGGLSSNQAEKKIADLLDKGGFIRNPQVNLMVTEMQSQQVSVLGQVNKPGRYPVDG 120

Query: 121 RRNVADVIALAGGVTPDGGDVVTIIRNDGKGGVSKQLVDIYAITHSGDTTSLPEVGANDV 180
           +R++ DV+A+AGG   +  D V I+ +   G  SK+ +D+  +  SGD +   E+ A D 
Sbjct: 121 KRSLTDVLAMAGGANEEAADTV-ILTHTSDGKTSKETIDLLELVRSGDPSKNRELVAGDQ 179

Query: 181 VYVERALRFYIYGEVQRPGVYKLERGTTVLQALSVGGGLTQRGTERGLVVKRRDADGNMQ 240
           V+VERA RFYIYGEVQ+PG YKLER   VLQALS GGGL+ RGTERG+ +KRRDA+G +Q
Sbjct: 180 VFVERAPRFYIYGEVQKPGSYKLERNMMVLQALSTGGGLSPRGTERGVRIKRRDANGVLQ 239

Query: 241 EIPVKKEDLLQADDTVYVKESWF 263
            + VK +DLL+ DD VYVKES F
Sbjct: 240 IMTVKHDDLLKPDDIVYVKESLF 262


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 604,541
Number of extensions: 24692
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 182
Effective length of database: 921,564
Effective search space: 167724648
Effective search space used: 167724648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)